DN617775

Overview
NameDN617775
Unique NameDN617775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11506 contig Csv1_Contig11506:259..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RK3B_ARATH (50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 3.845e-92
Identity = 163/217 (75.12%), Postives = 176/217 (81.11%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVXLLPFPT 653
            +IAVKCG+TA WDKWG RIP+S+L+VDDNIVSQVKT EKEG F+LQ+GCGQKK KH++K  VGHFRAQGVPLKRKLREFPVTEDALLP+GTSLGVRHF+PGQYVD+              R GF GMPASHGASLSHRS GSTGQRDAPGKVF            QRTVKNVWVYKIDPARNLMWVRGQVPGA GNFVFIKDA  KKPD+  LPFPT
Sbjct:   79 IIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKLPFPT 295          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ZYMMO (50S ribosomal protein L3 OS=Zymomonas mobilis GN=rplC PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.638e-42
Identity = 92/204 (45.10%), Postives = 125/204 (61.27%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  + + G  +PV+VL ++D  V  VK  +++G+ ++Q+G G  K K++TKP  GHF    V LK KL EFPV+EDA+L +GTS+   HFI GQ VDI              RWGF G+ A+HG SLSHRS GSTG R  PG+VF            QRT +N+ V   D  R+L++VRG VPG+ G ++ I+DAV
Sbjct:    5 VIAKKVGMTRLFQEDGRHVPVTVLKLEDVQVVAVKNKDQDGYVAVQLGAGSAKAKNVTKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLVDISGQTQGKGFAGAMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVFKNKKMAGHMGARQRTQQNLEVISTDAERDLIFVRGSVPGSKGAWLIIRDAV 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_NOVAD (50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplC PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.062e-41
Identity = 84/204 (41.18%), Postives = 126/204 (61.76%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  + + G  +PV+VL +++  V  V+T E++G+ +LQ+G G+ K K++ KP+  HF    VPLK ++ EF V +DALL +G+++   HF+PGQYVDI              RWGF GM A+HG S+SHR+ GSTG R  PG+VF            QRT +N+ V + D  R L++V+G VPG+   ++ ++DAV
Sbjct:    5 VIAKKVGMTRLFQEDGRHVPVTVLSLENCQVVSVRTAERDGYVALQLGAGEAKQKNVAKPQREHFAKAEVPLKMEVAEFRVADDALLDVGSTIAASHFVPGQYVDITGQTQGKGFQGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAGHMGDRQRTQQNLEVVRTDDERGLIFVKGSVPGSKNAWLLVRDAV 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_METS4 (50S ribosomal protein L3 OS=Methylobacterium sp. (strain 4-46) GN=rplC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.089e-41
Identity = 90/207 (43.48%), Postives = 121/207 (58.45%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623
            +IA K G+T  +   G  +PV+VL VD   V   +T EK G+ +LQVG G+ K K+++K E G F    V  KRKL EF VTEDAL+P+G  +   HFIPGQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T +N+ V + DP R L+ V G VPG +G ++ I+DAV +K
Sbjct:    5 VIAQKVGMTRVFTDAGEHVPVTVLKVDQCQVVAHRTVEKNGYVALQVGVGKAKVKNVSKAERGRFAIAKVEPKRKLAEFRVTEDALIPVGAEITADHFIPGQFVDVTGTTTGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIQIRDAVKRK 211          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_METNO (50S ribosomal protein L3 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.089e-41
Identity = 89/207 (43.00%), Postives = 121/207 (58.45%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623
            +IA K G+T  +   G  +PV+VL VD   V   +T EK G+ +LQVG G+ K K+++K E G F    V  KRKL EF V+EDAL+P+G  +   HFIPGQ+VD+              RW F G+ ASHG S+SHRS+GSTG R  PGK F            + T +N+ V + DP R L+ V G VPG +G ++ ++DAV +K
Sbjct:    5 VIAQKVGMTRVFTDAGEHVPVTVLKVDQCQVVAHRTVEKNGYVALQVGVGKAKVKNVSKAERGRFAIAKVEPKRKLAEFRVSEDALIPVGAEITADHFIPGQFVDVTGITTGKGFAGGMKRWNFGGLRASHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIHVRDAVKRK 211          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_GRABC (50S ribosomal protein L3 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplC PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.533e-40
Identity = 87/207 (42.03%), Postives = 119/207 (57.49%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623
            LIA K G+T  + + G  +PV+VL +D   V   +T E++G+ ++Q+G GQ K KH++K   GHF    V  K+KL EF V EDA+L  G +L   HF+ GQ VD+              RW F G+ ASHG S+SHRS GSTG R  PGK F            + T +NV V  +D AR L+ +RG +PGA G +V ++DAV +K
Sbjct:    5 LIARKLGMTRLFKEDGTHVPVTVLHLDQVQVVDTRTKERDGYTAVQLGFGQAKPKHVSKANKGHFARVKVEPKKKLVEFRVAEDAILEPGATLSAEHFLVGQKVDVTGTSKGKGFAGAMKRWNFAGLEASHGVSISHRSHGSTGNRQDPGKTFKNKKMAGHLGDERVTTQNVEVAHVDAARGLLMIRGSIPGAKGGYVLVRDAVKRK 211          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_METRJ (50S ribosomal protein L3 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rplC PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.416e-40
Identity = 87/207 (42.03%), Postives = 120/207 (57.97%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623
            +IA K G+T  +   G  +PV+VL +D   V   +T EK G+ +LQVG G+ K K+++  E G F    V  K+KL EF VTEDAL+P+G  +   HFIPGQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T +N+ V + DP R L+ V G VPG +G ++ I+DAV +K
Sbjct:    5 VIAQKVGMTRVFTDAGEHVPVTVLKIDQCQVVAHRTVEKNGYVALQVGVGKAKVKNVSAAERGRFAVAKVEPKKKLAEFRVTEDALIPVGAEITADHFIPGQFVDVTGTTTGKGFAGGIKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIQIRDAVKRK 211          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_MAGSA (50S ribosomal protein L3 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplC PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.416e-40
Identity = 92/217 (42.40%), Postives = 126/217 (58.06%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK-PDVXLLPFP 650
            LIA K G+T  + + G  +PV+VL VD   V   ++ EK+G+ ++Q+G G  K K+++KP   +F    V  K+KL EF V  + LL +GT L   HFIPGQYVD+              RW F+G+ A+HG S+SHRS GSTGQR  PGKVF            Q T +N+ V   D  R L+ V+G VPG  G++V ++DAV +K PD   +PFP
Sbjct:    5 LIAQKVGMTRIFTEDGTHVPVTVLKVDTCQVVSTRSVEKDGYVAVQLGAGTAKVKNVSKPARANFAKAKVEPKKKLVEFRVAPENLLEVGTELSAAHFIPGQYVDVTGTTIGKGFAGGMKRWNFRGLEATHGVSVSHRSHGSTGQRQDPGKVFKGKKMAGHMGDEQVTTQNLTVVSTDADRGLILVKGSVPGHEGSWVLVRDAVKRKLPDG--VPFP 219          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ERYLH (50S ribosomal protein L3 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplC PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.826e-40
Identity = 92/217 (42.40%), Postives = 127/217 (58.53%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVT-EDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVXLLPFP 650
            +IA K G+T  + + G  +PV+VL ++D  V   +T E++G+F+LQVG G  K K++ KP+   F    V LK K+ EF V  ED LLP+G ++   HFI GQ VDI              RWGF G+ A+HG S+SHRS GSTG R  PG+VF            QRT +N+ V + DP R L++V+G VPG   +++ I+DAV K P    +PFP
Sbjct:    5 VIAKKVGMTRLFQEDGRHVPVTVLALEDCQVVSQRTQERDGYFALQVGSGVAKQKNVAKPQREAFAKAEVGLKMKVAEFRVEGEDGLLPVGAAISAEHFIAGQKVDITGYTQGKGFAGAMKRWGFGGLRATHGVSISHRSHGSTGNRQDPGRVFKGKKMAGHMGDRQRTQQNLEVVRTDPERGLIFVKGSVPGTKNSWMLIRDAV-KLPLPEGVPFP 220          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_METPB (50S ribosomal protein L3 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplC PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.695e-39
Identity = 84/207 (40.58%), Postives = 122/207 (58.94%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623
            +IA K G+T  +   G  +PV+VL +D   V   +T EK+G+ +LQVG G+ K K++++ E G F    V  K+KL EF V+EDAL+P+G  +   HFIPGQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T +N+ V + DP R L+ V G VPG +G ++ ++D+V +K
Sbjct:    5 VIARKVGMTRVFTDAGEHVPVTVLQIDQCQVVAHRTTEKDGYVALQVGVGKAKVKNVSQAERGRFAVAKVEPKKKLAEFRVSEDALIPVGAEITADHFIPGQFVDVTGTTTGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLKVVRTDPERGLILVEGAVPGVAGGWIQVRDSVKRK 211          
The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK3B_ARATH3.845e-9275.1250S ribosomal protein L3-2, chloroplastic OS=Arabi... [more]
RL3_ZYMMO1.638e-4245.1050S ribosomal protein L3 OS=Zymomonas mobilis GN=r... [more]
RL3_NOVAD1.062e-4141.1850S ribosomal protein L3 OS=Novosphingobium aromat... [more]
RL3_METS43.089e-4143.4850S ribosomal protein L3 OS=Methylobacterium sp. (... [more]
RL3_METNO3.089e-4143.0050S ribosomal protein L3 OS=Methylobacterium nodul... [more]
RL3_GRABC1.533e-4042.0350S ribosomal protein L3 OS=Granulibacter bethesde... [more]
RL3_METRJ3.416e-4042.0350S ribosomal protein L3 OS=Methylobacterium radio... [more]
RL3_MAGSA3.416e-4042.4050S ribosomal protein L3 OS=Magnetospirillum magne... [more]
RL3_ERYLH5.826e-4042.4050S ribosomal protein L3 OS=Erythrobacter litorali... [more]
RL3_METPB1.695e-3940.5850S ribosomal protein L3 OS=Methylobacterium popul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bp
GGCTTATTGCCGTCAAGTGTGGAATAACCGCCACCTGGGATAAATGGGGC
GCCAGGATTCCCGTCTCTGTGCTTTTTGTCGATGATAATATCGTCTCTCA
AGTTAAAACCTTTGAGAAAGAAGGTTTCTTTTCCTTGCAGGTTGGATGCG
GGCAGAAGAAGGATAAACATATGACAAAACCTGAAGTGGGTCATTTTAGA
GCTCAAGGTGTTCCACTGAAGAGGAAATTGCGGGAGTTTCCTGTCACAGA
AGATGCACTTCTCCCCATTGGCACATCACTTGGAGTTCGTCATTTTATTC
CTGGCCAATACGTTGATATCACGGGTACCACGAAAGGGAAAGGTTTTCAG
GGTGGAATGAAAAGATGGGGATTTAAAGGAATGCCAGCTTCTCATGGTGC
ATCATTGTCGCATCGAAGTCTTGGTTCTACCGGTCAGAGGGATGCTCCTG
GCAAGGTATTTAAGGGCAAAAAAATGCCTGGGCGAATGGGTGGAAAGCAG
AGAACCGTAAAAAATGTATGGGTATACAAAATAGATCCAGCAAGGAATTT
GATGTGGGTGAGAGGCCAGGTGCCAGGTGCTTCAGGAAACTTTGTATTTA
TAAAGGATGCTGTTTACAAGAAACCTGATGTTNAACTGCTCCCATTCCCC
ACATA
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