DN617774

Overview
NameDN617774
Unique NameDN617774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11506 contig Csv1_Contig11506:691..1378. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617774 vs. ExPASy Swiss-Prot
Match: RK3B_ARATH (50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.952e-37
Identity = 76/102 (74.51%), Postives = 78/102 (76.47%), Query Frame = -3
Query:  381 QRDAPGKVFXXXXXXXXXXXKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFPTYFAAEDEKMEELEPLVADLGETDPFMTAD 686
            QRDAPGKVF            QRTVKNVWVYKIDPARNLMWVRGQVPGA GNFVFIKDA  KKPD+  LPFPTY A EDE   ELEPLVADLGE DPFM A+
Sbjct:  223 QRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKLPFPTYLAPEDEDPSELEPLVADLGEVDPFMLAE 324          
The following BLAST results are available for this feature:
BLAST of DN617774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RK3B_ARATH2.952e-3774.5150S ribosomal protein L3-2, chloroplastic OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01K19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617774 ID=DN617774; Name=DN617774; organism=Citrus sinensis; type=EST; length=688bp
TTTTTTTTTTTAGAAGAGTAATAATTATAATATTGCAAATTGTTTTAACT
ACAAAAGCTTGAACAACTAACGAGACAATTTGCAGGTTCGGTTTCCCCCA
TTGTCTTATTTCAAGTTTCAAACAGGAAGATTTCAATCCAAAAGCCAATG
GAAAGAGATAATGTCAATCACTATCAAAATCAGATGTTAACACCATGGAT
AAAATTACATGTTCTCCAGCTGCAATCCTATTGTAAGTAATAAAGAGGAA
AATCTAACTGACAGCCCCCGCTTTCTCCGTATTCACCCCCAAAAAAGAAG
AGCACTTCCGGTGGGTACCTAACCCTATGGAAGGGAGACACAGAATCTTA
TTACTTCTTAGGAATTGCATACAAAGCCCAATCTGCCGTCATAAATGGAT
CCGTTTCACCAAGATCAGCAACCAGAGGTTCCAATTCCTCCATCTTCTCG
TCTTCTGCTGCAAAGTATGTGGGGAATGGGAGCAGTTTAACATCAGGTTT
CTTGTAAACAGCATCCTTTATAAATACAAAGTTTCCTGAAGCACCTGGCA
CCTGGCCTCTCACCCACATCAAATTCCTTGCTGGATCTATTTTGTATACC
CATACATTTTTTACGGTTCTCTGCTTTCCACCCATTCGCCCAGGCATTTT
TTTGCCCTTAAATACCTTGCCAGGAGCATCCCTCTGAC
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