DN617763

Overview
NameDN617763
Unique NameDN617763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig722 contig Csv1_Contig722:319..953. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617763 vs. ExPASy Swiss-Prot
Match: CCR4F_ARATH (Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana GN=CCR4-6 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 6.059e-47
Identity = 92/144 (63.89%), Postives = 112/144 (77.78%), Query Frame = -2
Query:  194 SNLDPNSEELGD--ELIDDLSPALDSEAVNAEETTYNPSLWTPMEIATATGNADCTYLEHPLQLRSTYAEVEDCTGTRDSQGEPLVTSYNRRFKGTVDYILRSEGLQTVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAF 619
            + L  N+E L    EL+ ++     SEA+N+++ TY+PS WTPMEIATATG+ + T +EH L+L+STY+EVE    TRD  GEP+VTSY+R F GTVDYI RSEGLQTVRVLAPIPK AMQWTPG+PT KWGSDHIAL SE+AF
Sbjct:  602 AKLHDNNENLSQKGELVSEVPLKWSSEALNSDKITYSPSSWTPMEIATATGDPERTTVEHALELKSTYSEVEGQANTRDENGEPVVTSYHRCFMGTVDYIWRSEGLQTVRVLAPIPKQAMQWTPGFPTPKWGSDHIALVSELAF 745          
BLAST of DN617763 vs. ExPASy Swiss-Prot
Match: CCR4E_ARATH (Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis thaliana GN=CCR4-5 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.503e-21
Identity = 48/105 (45.71%), Postives = 69/105 (65.71%), Query Frame = -2
Query:  191 WTPMEIATATGNADCTYLEHPLQLRSTYAEVEDCTGTRDSQGEPLVTSYNRRFKGTVDYILRSEGLQTVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAFV 505
            W+  E+  ATG  + T+++H L+L S Y+ V     TRD +GEPL T+Y+ RF GTVDYI  ++ L  VRVL  +P   ++ T G P++ WGSDH+A+A E+ FV
Sbjct:  346 WSQEELQLATGGQETTHVQHQLKLNSAYSGVPGTYRTRDQRGEPLATTYHSRFLGTVDYIWHTKELVPVRVLETLPADVLRRTGGLPSENWGSDHLAIACELGFV 450          
BLAST of DN617763 vs. ExPASy Swiss-Prot
Match: CCR4C_ARATH (Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis thaliana GN=CCR4-3 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.564e-21
Identity = 52/106 (49.06%), Postives = 66/106 (62.26%), Query Frame = -2
Query:  194 SLWTPMEIATATGNADCTYLEHPLQLRSTYAEVEDCTGTRDSQGEPLVTSYNRRFKGTVDYILRSEGLQTVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAF 511
            S WT  EI  ATG  +  +  HPL+L S+YA V+    TRDS GEPL TSY+ +F GTVDY+  S+GL   RVL  +P   +  T G P ++ GSDH+AL SE  F
Sbjct:  339 SSWTKEEIRVATGQENSYWAAHPLKLNSSYASVKGSANTRDSVGEPLATSYHSKFLGTVDYLWYSDGLLPARVLDTLPIDVLCKTKGLPCQELGSDHLALVSEFVF 444          
The following BLAST results are available for this feature:
BLAST of DN617763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CCR4F_ARATH6.059e-4763.89Carbon catabolite repressor protein 4 homolog 6 OS... [more]
CCR4E_ARATH1.503e-2145.71Carbon catabolite repressor protein 4 homolog 5 OS... [more]
CCR4C_ARATH2.564e-2149.06Carbon catabolite repressor protein 4 homolog 3 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01K13_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617763 ID=DN617763; Name=DN617763; organism=Citrus sinensis; type=EST; length=635bp
TTTTAGGGGGAAAACAAAATTTGCAGCAAAATTTCAATTTGTTTACCTAC
AAGCAGAATGCTATAATATATACAACAATGTAGCAAGAGACCAAATACAC
ACATCATCATCGGCAAGAAAATCTGTGGCCTCTTATCATGGGATCTTAAA
CCTTTTTCTGATAGCTTTAGCATAATCATTTGATAGTCTCCACGAATGCC
ACTTCAGAAGCCAAGGCAATATGATCGCTGCCCCATTTCTTTGTTGGGTA
TCCTGGTGTCCACTGCATAGCATGTTTTGGTATTGGAGCAAGCACCCTCA
CTGTTTGGAGACCTTCAGAACGCAAAATGTAATCAACTGTGCCCTTGAAA
CGTCTATTGTAACTGGTCACCAAGGGCTCTCCTTGGGAATCCCTTGTCCC
TGTGCAATCCTCTACTTCTGCATATGTGCTTCGAAGCTGTAAAGGGTGTT
CCAAATAGGTGCAGTCTGCATTCCCTGTTGCAGTTGCTATTTCCATTGGT
GTCCATAATGATGGATTATAAGTAGTCTCCTCCGCATTGACAGCCTCAGA
ATCCAAGGCAGGAGACAAGTCATCAATAAGTTCATCACCAAGTTCCTCAG
AATTAGGATCCAAATTTGATTGTGCATAGTGATCA
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