EY662350

Overview
NameEY662350
Unique NameEY662350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7055 contig Csv1_Contig7055:36..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY662350 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.948e-31
Identity = 74/134 (55.22%), Postives = 90/134 (67.16%), Query Frame = 1
Query:  139 MKGGRSKADAVGTDSKLKSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDE 540
            MKGG+SKA +   D+KL  K  +A                    SAFFVFME+FRK +KE HPNNKSVA VGKA G+KWK ++  EKAPF+ +AEKRK +Y KN+Q YNK+ A G  AAEE ESDKS+SEVND+
Sbjct:    1 MKGGKSKAKS---DNKLAVK-KQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEEEESDKSRSEVNDD 128          
BLAST of EY662350 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.340e-31
Identity = 70/138 (50.72%), Postives = 88/138 (63.77%), Query Frame = 1
Query:  139 MKGGRSKADAVGTDSKL----KSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDE 540
            MKGG+SK ++   D KL    K    +A K                  SAFFVFMEEFRK F + HP NK+V+ VGKAAG KWK+MS+ EKAP+V ++EKRK +Y KNM+ YNK+ A+G    +E ES+KS SEVNDE
Sbjct:    1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDE 138          
BLAST of EY662350 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.823e-29
Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 1
Query:  139 MKGGRSKADAVGTDSKL--KSKGARA---GKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDE 540
            MKGG+SK ++   ++KL    KGA A   GK+                 SAFFVFM +FR+Q+K+ HPNNKSVA VGKA GE+WKS+SE+EKAP+V+RA K+K +Y   +Q YNK+L       +E  SDKSKSEVNDE
Sbjct:    1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLE---GKDDEEGSDKSKSEVNDE 136          
BLAST of EY662350 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.633e-28
Identity = 73/144 (50.69%), Postives = 88/144 (61.11%), Query Frame = 1
Query:  139 MKGGRSKADAVGTDSKL--KSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA--------EENESDKSKSEVNDE 540
            MKG +SK  A   D+KL  KSKGA    +                 SAFFVFMEEFRK+FKE +P NKSVA VGKAAG++WKS+SE +KAP+V +A K K +YNK +  YNK  +     A        +E ESDKSKSEVNDE
Sbjct:    1 MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDE 143          
BLAST of EY662350 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.219e-26
Identity = 71/148 (47.97%), Postives = 88/148 (59.46%), Query Frame = 1
Query:  139 MKGGRSKADAVGTDSKL--KSKGA-RAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN-----------KQLADGVNAAEENESDKSKSEVNDE 540
            MKG +SK  A   D+KL  KSKGA +   +                 SAFFVFM EFR++FK+ +P NKSVA VGKAAGE+WKS+SE EKAP+V +A K K +YNK +  YN           K  A  V   +E ESDKSKSE+ND+
Sbjct:    1 MKGAKSKG-AAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEINDD 147          
BLAST of EY662350 vs. ExPASy Swiss-Prot
Match: HMGB3_BOVIN (High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 47/140 (33.57%), Postives = 69/140 (49.29%), Query Frame = 1
Query:  154 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAA---------EENESDKSKSEVNDE 540
            +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K A+P   S+  V K  GE W ++S+ EK P++ +A K K  Y K++ DY +K   DG   A         EE+E D+ + E  +E
Sbjct:   64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGAKGAAKVARKKVEEEDEEDEEEEEEEEE 196          
BLAST of EY662350 vs. ExPASy Swiss-Prot
Match: HMGB3_CHICK (High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 47/141 (33.33%), Postives = 67/141 (47.52%), Query Frame = 1
Query:  154 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAA----------EENESDKSKSEVNDE 540
            +KAD V  D ++K  G A+ GK+                 SAFF+F  EFR + K  +P   S+  V K  GE W ++S+ EK P+  +A K K  Y K++ DY +K   DG   A          EE+E ++   E  DE
Sbjct:   64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SAFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFDGAKGAATKAARKKVEEEDEEEEEDEEEEDE 197          
BLAST of EY662350 vs. ExPASy Swiss-Prot
Match: HMGB3_MOUSE (High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 45/139 (32.37%), Postives = 67/139 (48.20%), Query Frame = 1
Query:  154 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNA--------AEENESDKSKSEVNDE 540
            +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K  +P   S+  V K  GE W ++S++EK P+V +A K K  Y K++ DY +K   DG            EE E ++ + E  +E
Sbjct:   64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEEEEEEEEEEEEE 195          
The following BLAST results are available for this feature:
BLAST of EY662350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
HMGL_IPONI1.948e-3155.22HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_SOYBN4.340e-3150.72HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_VICFA1.823e-2951.08HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE2.633e-2850.69DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT3.219e-2647.97HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
HMGB3_BOVIN4.512e-1233.57High mobility group protein B3 OS=Bos taurus GN=HM... [more]
HMGB3_CHICK6.516e-1133.33High mobility group protein B3 OS=Gallus gallus GN... [more]
HMGB3_MOUSE8.510e-1132.37High mobility group protein B3 OS=Mus musculus GN=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-043-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662350 ID=EY662350; Name=EY662350; organism=Citrus sinensis; type=EST; length=541bp
CACGCGTCCGCTTTTGTCTTCCAAAACCCTAACCTCACCAGGTAACTCGC
TGAGTCTCTCCGGCGCTGACTCAGTCCGAGTCGCCCCGATTTTCACCGAT
TCTCACCGGTTTGCATCATTTTTAGTGCAGGATTCATCATGAAAGGAGGC
AGATCGAAAGCTGACGCCGTAGGAACTGATAGCAAGCTGAAGAGCAAAGG
GGCGAGAGCCGGCAAGCGAACAGCGAAGCCCAAGGCTGCGAAAGATCCAA
ACAAGCCGAAGAGGCCTCCTAGTGCTTTCTTCGTTTTCATGGAGGAGTTC
AGGAAGCAGTTCAAAGAAGCTCATCCTAACAATAAATCTGTTGCTACTGT
TGGCAAAGCTGCTGGAGAAAAATGGAAGTCAATGTCAGAAGATGAGAAAG
CGCCATTCGTTGAAAGGGCTGAGAAAAGAAAGTCTGATTACAACAAGAAC
ATGCAGGATTACAACAAGCAGTTGGCTGATGGAGTAAATGCTGCTGAGGA
AAATGAATCTGACAAGTCCAAGTCTGAAGTGAATGATGAGG
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