DN617402

Overview
NameDN617402
Unique NameDN617402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11722 contig Csv1_Contig11722:79..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617402 vs. ExPASy Swiss-Prot
Match: ATPX_SPIOL (ATP synthase subunit b', chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 3.961e-47
Identity = 102/150 (68.00%), Postives = 114/150 (76.00%), Query Frame = 3
Query:  231 PSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIAALSEEIVRKVLPV 680
            PSLA EIEKA+LFDFNLTLPIIM EFL LMFALDKIYY+PLG+FMD+RD +IKE+L+ VKDTS EVKQLEEQ               L KMKKETQLEVE KLA GRKKI            +QKEDTIKSLDSQI+ALS++IV+KVLPV
Sbjct:   72 PSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPV 221          
BLAST of DN617402 vs. ExPASy Swiss-Prot
Match: ATPX_CHLRE (ATP synthase subunit b', chloroplastic OS=Chlamydomonas reinhardtii GN=ATPG PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.590e-18
Identity = 48/148 (32.43%), Postives = 80/148 (54.05%), Query Frame = 3
Query:  234 SLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIAALSEEIVRKVLP 677
            ++ A  E   +FDFNLTLP++  EFL+LM  L+K +++P+G  +DERDN I+ KL SVKD + +V +L  +               +   K   Q E+++     + KI            ++    +KSLD+Q+  +S E++++VLP
Sbjct:   57 AMPAAAEAGKIFDFNLTLPVMAGEFLLLMVFLEKTWFTPVGKVLDERDNLIRSKLGSVKDNTGDVDKLVLEAETILKSARSDVSAMINTKKAAKQSELDKTYNEAKAKITAEVESSIAGLEQESASMLKSLDAQVDKISAEVLKRVLP 204          
BLAST of DN617402 vs. ExPASy Swiss-Prot
Match: ATPX_TRIEI (ATP synthase subunit b' OS=Trichodesmium erythraeum (strain IMS101) GN=atpG PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.168e-16
Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  252 EKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIAALSEEIVRKVL 674
            EK  LFD N TLP++ ++FL+L F LDKI+Y PLG  +D R + I+E     K+   + KQL EQ               +   + E +     K+AV +K+             +QKE  ++ L+ Q+ +LS +I+ K+L
Sbjct:   15 EKGGLFDINATLPLMAIQFLLLAFVLDKIFYKPLGKAIDSRADYIRENQVKAKERLAKAKQLAEQYEQEFAQTRQKSQVVIVAAQAEAEKIAATKVAVAQKEAQVKREQAAQEIEKQKEVALEQLEEQVDSLSRQILEKLL 155          
BLAST of DN617402 vs. ExPASy Swiss-Prot
Match: ATPX_CYAPA (ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa GN=atpG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.384e-14
Identity = 48/153 (31.37%), Postives = 73/153 (47.71%), Query Frame = 3
Query:  237 LAAEIEKA----ALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIAALSEEIVRKVLPVQ 683
            LA E E A     LFDF+ TLP++MV+ LVLM  L+ ++Y PL   +DER   I+   N  +    +  +L  Q                   + E Q  V +KL   +KK              QK++ +KSL+S++  LS +I+ K+L +Q
Sbjct:    8 LAIETEAAKPEGGLFDFDATLPVMMVQLLVLMLILNAVFYKPLIKILDERKEYIQSNFNEAEKCLAQAAELTTQYETKITDARQNASKLTNTTRSEIQRFVSEKLEEAQKKADSELASATNKLELQKDEALKSLESEVQTLSTKILEKLLGIQ 160          
BLAST of DN617402 vs. ExPASy Swiss-Prot
Match: ATPX_SYNP1 (ATP synthase subunit b' OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.742e-13
Identity = 39/148 (26.35%), Postives = 75/148 (50.68%), Query Frame = 3
Query:  231 PSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIAALSEEIVRKVL 674
            P L   I +  +FDF+ TLP++ V+FL+L   L+ + Y PLG  +D RD  I+  L   K+  ++  +L  Q               + + + E Q     ++A  ++ +            +QK+ T+++L+ Q+++LSE+++ K+L
Sbjct:   11 PLLFRPILERLMFDFDATLPLMAVQFLILTVILNALLYKPLGQALDNRDEYIRTNLQQAKERLQQATELANQYEQELAYTRREAQAIIEEARAEAQKIATAEIAAAQQALQAELMKAQAEIDQQKQATLQALEGQVSSLSEQLLAKLL 158          
BLAST of DN617402 vs. ExPASy Swiss-Prot
Match: ATPX_RHDSA (ATP synthase subunit b', chloroplastic OS=Rhodomonas salina GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.336e-13
Identity = 39/145 (26.90%), Postives = 72/145 (49.66%), Query Frame = 3
Query:  249 IEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIAALSEEIVRKVLPVQ 683
            + +  LFDFN TLP+++++ L+LM  L+ I+Y+P+   +DERD  I++ L    +T  + + + +Q               +   ++E Q  V  ++   +K               QKE  +++L+ Q+  LSE+I  K+L  Q
Sbjct:    8 LAEGGLFDFNATLPLMVLQILLLMVVLNAIFYTPIARVLDERDEYIRKNLTQASETLAKAEAITKQYEQDLAKERRDAQMIIASSQQEAQEIVAMEIKQAQKDTELLVNEATTQLNSQKEKALQALEKQVNTLSEQIKNKLLSGQ 152          
BLAST of DN617402 vs. ExPASy Swiss-Prot
Match: ATPX_THEEB (ATP synthase subunit b' OS=Thermosynechococcus elongatus (strain BP-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 36/137 (26.28%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  264 LFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIAALSEEIVRKVL 674
            +FDF+ TLP++ V+FL+L   L+ + Y PLG  +D RD  I+  L   K+  ++  +L +Q               + + + E Q     ++A  ++ +            +QK+ T+++L+ Q+A+LSE+++ K++
Sbjct:    1 MFDFDATLPLMAVQFLILTVILNALLYKPLGQALDNRDEYIRTNLQQAKERLQQATELAQQYEQELASTRRQAQALIEEARVEAQKIATAEIAEAQQAVQAELLKIQAEIDQQKQATLQALEGQVASLSEQLLAKLM 137          
BLAST of DN617402 vs. ExPASy Swiss-Prot
Match: ATPX_PORPU (ATP synthase subunit b', chloroplastic OS=Porphyra purpurea GN=atpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.168e-12
Identity = 42/151 (27.81%), Postives = 71/151 (47.02%), Query Frame = 3
Query:  231 PSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIAALSEEIVRKVLPVQ 683
            P L AE  +  LFDFN TLP++ ++FL+LM  L+ I+Y P+   +DERD  I+  L +      +  +L  +               +   +K+ Q  V + +   +                QKE+ +K+L+ Q+  LS++I  K+L  Q
Sbjct:    5 PLLLAEEIEGGLFDFNGTLPLMALQFLILMLLLNTIFYKPVTKILDERDEYIRTTLTTASSMLVKADELAAKYEEDLSKARRDAQAKIAASQKDAQSIVSEDIKKAQMNAEKLITEASKQLNIQKEEALKTLEDQVDTLSDQIKTKLLSSQ 155          
BLAST of DN617402 vs. ExPASy Swiss-Prot
Match: ATPX_SYNP2 (ATP synthase subunit b' OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 43/150 (28.67%), Postives = 74/150 (49.33%), Query Frame = 3
Query:  237 LAAE-IEKAA---LFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIAALSEEIVRKVL 674
            LA E +EK A   LFDF+ TLP++ ++FLVL   L+K++Y P+G  +D+R + I+  L   K+  ++ + L  Q               + K + E Q  V  ++   + +              Q+E   KSL+ Q+ +LS+ I  K++
Sbjct:    8 LATEAVEKTAEGGLFDFDATLPVMAIQFLVLAALLNKLFYKPIGQAIDDRSDYIRTNLVDAKERQQKAEDLAAQYEQELRDVRREAQDVIAKAQAEAQKVVADEVKSAQAEALAEREKAALEIEAQRESAFKSLEQQVDSLSQAIASKLV 157          
BLAST of DN617402 vs. ExPASy Swiss-Prot
Match: ATPX_PORYE (ATP synthase subunit b', chloroplastic OS=Porphyra yezoensis GN=atpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 43/151 (28.48%), Postives = 71/151 (47.02%), Query Frame = 3
Query:  231 PSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIAALSEEIVRKVLPVQ 683
            P L AE  +  LFDFN TLP++ ++FL LM  L+ I+Y P+   +DERD  I+  L +      +  +L  +               +   +KE Q  V + +   +                QKE+ +K+L++Q+  LS++I  K+L  Q
Sbjct:    5 PFLLAEEIEGGLFDFNGTLPLMALQFLTLMVLLNTIFYKPVTKVLDERDEYIRTTLTTASSMLVKADELAAKYEEDLSEARRNAQLKIASSQKEAQNIVSEDIKKAQLNAEKLIAEASKQLNVQKEEALKTLENQVDTLSDQIKVKLLSSQ 155          
The following BLAST results are available for this feature:
BLAST of DN617402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ATPX_SPIOL3.961e-4768.00ATP synthase subunit b', chloroplastic OS=Spinacia... [more]
ATPX_CHLRE6.590e-1832.43ATP synthase subunit b', chloroplastic OS=Chlamydo... [more]
ATPX_TRIEI6.168e-1632.62ATP synthase subunit b' OS=Trichodesmium erythraeu... [more]
ATPX_CYAPA3.384e-1431.37ATP synthase B' chain, cyanelle OS=Cyanophora para... [more]
ATPX_SYNP13.742e-1326.35ATP synthase subunit b' OS=Synechococcus sp. (stra... [more]
ATPX_RHDSA8.336e-1326.90ATP synthase subunit b', chloroplastic OS=Rhodomon... [more]
ATPX_THEEB1.089e-1226.28ATP synthase subunit b' OS=Thermosynechococcus elo... [more]
ATPX_PORPU3.168e-1227.81ATP synthase subunit b', chloroplastic OS=Porphyra... [more]
ATPX_SYNP25.403e-1228.67ATP synthase subunit b' OS=Synechococcus sp. (stra... [more]
ATPX_PORYE9.217e-1228.48ATP synthase subunit b', chloroplastic OS=Porphyra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617402 ID=DN617402; Name=DN617402; organism=Citrus sinensis; type=EST; length=787bp
TTTCAGCAAACGCAAACGCAAAACTAGTAAAATTTCAATCTGCCATGGCT
AGCATGATCGTGGCATCCTCCAATGCCAAGCCACTCTCTCCACTGCCCAT
TACTTCTCAATCACCAAAACCCAGAATCCAAATCCCCCAAATCAAAATCC
CACAAAAGTTGCTTAAACTCTCCTCCTCCGCTCTCAAATCACTCTCCGCT
GTGGCCGTCACGTCGCTAGCATTTTCCCCTCCGTCTCTGGCAGCTGAAAT
CGAAAAGGCAGCACTCTTCGATTTCAACCTAACCTTGCCCATTATCATGG
TTGAGTTCTTGGTTCTGATGTTCGCGTTGGACAAGATTTACTACTCTCCC
CTCGGGAACTTCATGGACGAGAGGGACAATGCTATCAAGGAAAAGCTCAA
CAGCGTCAAGGACACTTCCGAGGAAGTGAAGCAGCTAGAAGAGCAAGCTG
CTGCCGTCATGAGGGCTGCCAGAGCGGAGATATCGGCGGCCTTGACTAAG
ATGAAGAAGGAGACTCAGTTGGAAGTTGAGCAGAAGCTTGCTGTGGGGAG
GAAGAAAATTGAGGCTGAGCTTCAGGAAGCTTTGGCTAATTTGGAGAGGC
AAAAGGAGGATACCATTAAGTCTCTTGACTCTCAGATTGCTGCTCTCAGT
GAAGAGATTGTCAGGAAGGTCCTTCCTGTTCAATAACTTTTTTTAAAAAA
AAAATTGTGTTGTTGATTTTGTGTTTATGAAATGACAGAATGTAATTGTA
ATACCTCCTTCACTTATATATATTTTTGTGACCTAAT
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