DN617394

Overview
NameDN617394
Unique NameDN617394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9490 contig Csv1_Contig9490:142..922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617394 vs. ExPASy Swiss-Prot
Match: SNUT2_MOUSE (U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=2 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 3.284e-70
Identity = 130/232 (56.03%), Postives = 164/232 (70.69%), Query Frame = 3
Query:    3 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSP-------LVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT-KKNTSIIYECFQGELEV-VKEIP 671
            ++N YACLVCGKY+QGRG KSHAY HS++  HHV++NL T K YCLPD YEI D SL+DI +VL P FTK+Q+  LDK    SRA DG+ YLPG+VGLNNIK  D+ N  +Q+L  V PLRN+FL  +NY++ K P       LV RFGEL RK+W+ RNFK  VSPHE LQAV+  SKK F+I  Q + V+F+SW LN LHS L  T KK  +I+ + FQG + +  K++P
Sbjct:  129 HINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVNDVFQGSMRIFTKKLP 360          
BLAST of DN617394 vs. ExPASy Swiss-Prot
Match: SNUT2_HUMAN (U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 3.284e-70
Identity = 130/232 (56.03%), Postives = 164/232 (70.69%), Query Frame = 3
Query:    3 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSP-------LVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT-KKNTSIIYECFQGELEV-VKEIP 671
            ++N YACLVCGKY+QGRG KSHAY HS++  HHV++NL T K YCLPD YEI D SL+DI +VL P FTK+Q+  LDK    SRA DG+ YLPG+VGLNNIK  D+ N  +Q+L  V PLRN+FL  +NY++ K P       LV RFGEL RK+W+ RNFK  VSPHE LQAV+  SKK F+I  Q + V+F+SW LN LHS L  T KK  +I+ + FQG + +  K++P
Sbjct:  130 HINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKLP 361          
BLAST of DN617394 vs. ExPASy Swiss-Prot
Match: SNUT2_PONAB (U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 4.290e-70
Identity = 130/232 (56.03%), Postives = 164/232 (70.69%), Query Frame = 3
Query:    3 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSP-------LVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT-KKNTSIIYECFQGELEV-VKEIP 671
            ++N YACLVCGKY+QGRG KSHAY HS++  HHV++NL T K YCLPD YEI D SL+DI +VL P FTK+Q+  LDK    SRA DG+ YLPG+VGLNNIK  D+ N  +Q+L  V PLRN+FL  +NY++ K P       LV RFGEL RK+W+ RNFK  VSPHE LQAV+  SKK F+I  Q + V+F+SW LN LHS L  T KK  +I+ + FQG + +  K++P
Sbjct:  130 HVNAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKLP 361          
BLAST of DN617394 vs. ExPASy Swiss-Prot
Match: UBP10_SCHPO (Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe GN=ubp10 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.309e-54
Identity = 115/263 (43.73%), Postives = 157/263 (59.70%), Query Frame = 3
Query:    3 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLML 779
            NL+VYACLVCG+Y+QGRG  SHAY H+L   HHV++N  T K Y LP+ Y++   +L DI +V+ P FTK +V +LD     S  L    Y+PG VG+NNIK  D+ NV I  L  V P RN+FL+ +N+ +C   LV R   L RK+W+ + FK  VSP E +Q V   S K++ I  Q +PVEF+SW LNTLH+ L   K    K TSI++  FQG + +  +  +       Q+ EKG       D +  +T+ +PFL L
Sbjct:   83 NLSVYACLVCGRYFQGRGPSSHAYFHALTENHHVFVNCSTLKFYVLPESYQVESSALQDIAYVMRPTFTKLEVQRLDHTPQLSYDLMLKPYVPGFVGMNNIKNNDYFNVVIHMLAHVKPFRNYFLL-KNFDNCPQ-LVQRLAILIRKLWNHKAFKSHVSPQELIQEVTVLSHKKYSINEQKDPVEFLSWFLNTLHNCLGGKKSTIAKPTSIVHYSFQGFVRIESQKIR-------QHAEKGEQVVFTGDRV-IQTNVVPFLYL 335          
BLAST of DN617394 vs. ExPASy Swiss-Prot
Match: SAD1_YEAST (Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cerevisiae GN=SAD1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.352e-23
Identity = 67/226 (29.65%), Postives = 112/226 (49.56%), Query Frame = 3
Query:    6 LNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPS----LDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVE---FMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVK 662
            LNVY CLVCG YYQGR +KS A+ HS++  HHV++NL + K Y LP   +I        L+ I+    P +  + ++   +       L    YL G +G  N    D+ +  +  +  + P+R+ FL+  N+   +   + R     +KIW  + FK  +S  +F+      S  + R G+  NP++   F+ WL N + S   + K   SI+    +G++++ K
Sbjct:   55 LNVYCCLVCGHYYQGRHEKSPAFIHSIDENHHVFLNLTSLKFYMLPQNVQILHDGEVQLLNSIKFAAYPTYCPKDLEDFPRQCF---DLSNRTYLNGFIGFTNAATYDYAHSVLLLISHMVPVRDHFLL--NHFDNQGEFIKRLSICVKKIWSPKLFKHHLSVDDFV------SYLKVREGLNLNPIDPRLFLLWLFNKICSSSNDLK---SILNHSCKGKVKIAK 266          
BLAST of DN617394 vs. ExPASy Swiss-Prot
Match: UBP33_XENTR (Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis GN=usp33 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.454e-11
Identity = 71/274 (25.91%), Postives = 114/274 (41.61%), Query Frame = 3
Query:    9 NVYACLVCGKYYQGRGQK--SHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSR----------------ALDGSDYLP--GMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHC--KSPLVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM 764
            N++ACL  G  Y G G+    H+  HS +  H + +NL T +V+C    Y  +     D +    P   K Q     ++K+ S                  L+  D L   G+ GL NI  T ++N  +Q+L    PL ++FL          K  L   + +L   IWH +N  G V P    Q + K+    FR   Q +  EF+  L++ LH +L+       I+      +  +V+E      S +D N     D G   D+  +E+ ++
Sbjct:   39 NLWACLENGCSYVGCGESHVDHSTLHSQDTKHCLTVNLTTLRVWC----YTCSKEVFLDRKLSTQPTSAKLQDSHTQESKMSSSLTLKIPAAVVSENLDIELEEEDELKTRGLTGLKNIGNTCYMNAALQALSNCPPLTHYFLDCGGLARTDKKPALCKSYQKLMSDIWH-KNRPGFVIPTNLFQGI-KSVNPTFRGYSQQDAQEFLRCLMDVLHEELKE-----QIVEVEEDAQTGIVEENLDEDKSQSD-NDFHSCDSGSSSDHAESESRKL 300          
BLAST of DN617394 vs. ExPASy Swiss-Prot
Match: UBP33_PONAB (Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.512e-11
Identity = 62/221 (28.05%), Postives = 95/221 (42.99%), Query Frame = 3
Query:    9 NVYACLV--CGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEI-------NDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRAL-----------DGSDYL--PGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCKSPLVHR-FGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLR 599
            N++ACL   C     G  Q  H+  HS E  H++ +NL T +V+C     E+         PSL  +R     +    Q  ++  N      L           D  D L   G+ GL NI  T ++N  +Q+L    PL  FFL      R  K P + + + +L  ++WH ++  G V P    Q + K     FR   Q +  EF+  L++ LH +L+
Sbjct:   39 NLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTQPSLPHVRQPHQIQENSVQDFKIPSNTTLKTPLVAVFDDLDIEVDEEDELRARGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLDCGGLARTDKKPAICKSYLKLMTELWH-KSRPGSVVPTNLFQGI-KTVNPTFRGYSQQDAQEFLRCLMDLLHEELK 257          
BLAST of DN617394 vs. ExPASy Swiss-Prot
Match: UBP33_HUMAN (Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo sapiens GN=USP33 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 62/221 (28.05%), Postives = 95/221 (42.99%), Query Frame = 3
Query:    9 NVYACLV--CGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEI-------NDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRAL-----------DGSDYL--PGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCKSPLVHR-FGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLR 599
            N++ACL   C     G  Q  H+  HS E  H++ +NL T +V+C     E+         PSL  +R     +    Q  ++  N      L           D  D L   G+ GL NI  T ++N  +Q+L    PL  FFL      R  K P + + + +L  ++WH ++  G V P    Q + K     FR   Q +  EF+  L++ LH +L+
Sbjct:   70 NLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTQPSLPHVRQPHQIQENSVQDFKIPSNTTLKTPLVAVFDDLDIEADEEDELRARGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLDCGGLARTDKKPAICKSYLKLMTELWH-KSRPGSVVPTTLFQGI-KTVNPTFRGYSQQDAQEFLRCLMDLLHEELK 288          
The following BLAST results are available for this feature:
BLAST of DN617394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SNUT2_MOUSE3.284e-7056.03U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus mus... [more]
SNUT2_HUMAN3.284e-7056.03U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sa... [more]
SNUT2_PONAB4.290e-7056.03U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo a... [more]
UBP10_SCHPO4.309e-5443.73Probable mRNA-splicing protein ubp10 OS=Schizosacc... [more]
SAD1_YEAST1.352e-2329.65Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cer... [more]
UBP33_XENTR3.454e-1125.91Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopu... [more]
UBP33_PONAB4.512e-1128.05Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo ... [more]
UBP33_HUMAN5.892e-1128.05Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01C09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617394 ID=DN617394; Name=DN617394; organism=Citrus sinensis; type=EST; length=781bp
CAAACTTAAATGTGTATGCGTGTTTGGTTTGTGGTAAGTATTACCAAGGA
AGAGGGCAGAAATCTCATGCATATACTCATAGCTTGGAAGCAGGACACCA
TGTTTACATCAATCTTCGAACAGAGAAAGTTTATTGCCTTCCTGATGGTT
ATGAAATTAATGACCCTTCACTGGATGATATTCGGCATGTTCTAAATCCA
AGGTTTACCAAGGAGCAAGTAGATCAGCTTGACAAAAATAAGCTATGGTC
TAGGGCTTTGGATGGTTCGGACTATCTTCCTGGAATGGTGGGTCTGAATA
ACATCAAGGAGACTGATTTTGTGAATGTCACAATTCAATCTCTAATGAGA
GTTACCCCATTAAGGAACTTCTTCCTTATCCCTGAAAATTACCGGCACTG
CAAATCTCCACTTGTTCATCGTTTTGGAGAACTTACTAGGAAGATTTGGC
ATGCTCGAAATTTTAAAGGACAGGTCAGCCCACATGAGTTTCTACAAGCA
GTTATGAAAGCCAGTAAGAAACGGTTTCGAATAGGTGTACAGTCCAACCC
TGTTGAATTCATGTCATGGCTTCTTAACACACTGCATTCAGATCTTAGAA
ATACAAAGAAAAATACTAGCATCATATATGAGTGCTTTCAGGGGGAGCTG
GAAGTTGTGAAGGAGATTCCTAAAAATACCATCAGTGGTAATGACCAGAA
TACTGAAAAAGGTTCAGATGGGGGAGATGATCATGATAACATTACTACAG
AAACTTCTAGGATGCCGTTCTTGATGCTTGG
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