DN617387

Overview
NameDN617387
Unique NameDN617387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:454..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617387 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 7.049e-41
Identity = 88/121 (72.73%), Postives = 97/121 (80.17%), Query Frame = -2
Query:  218 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 580
            SKELESLERQLDMSLKQIRSTRTQ MLD L +LQ KE  L+EAN+TLKQRLMEG  +N LQ   +A+D GYG +  Q QGD FFH LECEPTLQIGYQ  DPI+V  AGPS+NNYM GWLP
Sbjct:  123 SKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGSTLN-LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ-NDPITVGGAGPSVNNYMAGWLP 241          
BLAST of DN617387 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.617e-39
Identity = 85/124 (68.55%), Postives = 95/124 (76.61%), Query Frame = -2
Query:  218 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGL-KPAQPQGDTFFHA--LECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 580
            SK+LE+LERQLD SLKQIRSTRTQ+MLD L +LQ KE LL EAN+ L+QR MEGYQ+N+LQLN SAED GYG        GD  F    +ECEPTLQIGY   DP SVVTAGPS+NNYM GWLP
Sbjct:  125 SKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQR-MEGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDPGSVVTAGPSMNNYMGGWLP 247          
BLAST of DN617387 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.924e-30
Identity = 73/123 (59.35%), Postives = 88/123 (71.54%), Query Frame = -2
Query:  221 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL-NPS-AEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYM-QGWL 580
            SKELE LERQLD SL+QIRSTRTQ+MLD L +LQ +EQ+L EANKTLK+R  E  Q N  Q+ +PS     GYG +PAQ  G+ F+H LECEPTLQIGY     ++  TA  ++NNYM  GWL
Sbjct:  121 SKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQQQVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQIGYHSDITMATATAS-TVNNYMPPGWL 242          
BLAST of DN617387 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.286e-30
Identity = 74/124 (59.68%), Postives = 88/124 (70.97%), Query Frame = -2
Query:  218 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCG-YGLKPAQPQ--GDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 580
            +KELESLERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+ RL +GYQ+  LQLNP+ E+   YG    Q Q     FF  LECEP LQIGYQ       + AGPS+NNYM GWLP
Sbjct:  125 TKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQM-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ--DGMGAGPSVNNYMLGWLP 245          
BLAST of DN617387 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.629e-29
Identity = 73/126 (57.94%), Postives = 88/126 (69.84%), Query Frame = -2
Query:  218 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED--CGYGLKPAQPQGDT---FFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 580
            +KELE LERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+ RL +GYQ+  LQLNP+ ED    YG    Q Q ++   FF  LECEP LQ+GYQ       + AGPS NNYM GWLP
Sbjct:  125 TKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLADGYQM-PLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLECEPILQMGYQGQQDHG-MEAGPSENNYMLGWLP 248          
BLAST of DN617387 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.074e-20
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = -2
Query:  407 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVN 580
            SKELESLERQLDMSLKQIRSTRTQ MLD LT+ Q KE  L+EAN+TLKQRLMEG Q+N
Sbjct:  123 SKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQRLMEGSQLN 180          

HSP 2 Score: 29.261 bits (64), Expect = 1.074e-20
Identity = 15/31 (48.39%), Postives = 18/31 (58.06%), Query Frame = -3
Query:  295 VQKIVVMGLNQLNLRAIPSFTPWNVNPHCKL 387
            + K+  M   QL LRA+ SF  W VN  CKL
Sbjct:  186 MHKLWAMAGKQLKLRAMASFILWIVNLLCKL 216          
BLAST of DN617387 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.382e-20
Identity = 60/127 (47.24%), Postives = 81/127 (63.78%), Query Frame = -2
Query:  218 KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL-NPSAEDCGYGLKPAQPQ----GDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 577
            KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++L E   V   Q+        GY  +P   Q    G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:  125 KELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of DN617387 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.382e-20
Identity = 60/127 (47.24%), Postives = 81/127 (63.78%), Query Frame = -2
Query:  218 KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL-NPSAEDCGYGLKPAQPQ----GDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 577
            KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++L E   V   Q+        GY  +P   Q    G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:  125 KELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of DN617387 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.404e-19
Identity = 62/130 (47.69%), Postives = 79/130 (60.77%), Query Frame = -2
Query:  218 KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDTFFHALE--CEPTLQIGYQPAD-PISVVTAGPSLNNYMQGWLP 577
            KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++L E  Q++       A   GY       ++   P  G+ FFH+LE   EPTLQIG+ P     S VTA      +M  WLP
Sbjct:  125 KELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTPEQMNNSCVTA------FMPTWLP 248          
BLAST of DN617387 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.764e-18
Identity = 56/130 (43.08%), Postives = 76/130 (58.46%), Query Frame = -2
Query:  221 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAE-----DCGYGLKPAQPQGDTFFHALECEPTLQIGYQP---ADPISVVTAGPSL--NNYMQGWL 580
            SKELE LERQLD SLKQ+R  +TQYMLD L++LQ KE +L +AN+ L  +L +   V    +    E     +  YG   A  QG   + +LEC+PTLQIGY     ++ ++V   G S   N Y+ GW+
Sbjct:  122 SKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRHHHIGGGWEGGDQQNIAYGHPQAHSQG--LYQSLECDPTLQIGYSHPVCSEQMAVTVQGQSQQGNGYIPGWM 249          
The following BLAST results are available for this feature:
BLAST of DN617387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AGL9_PETHY7.049e-4172.73Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MTF1_PEA8.617e-3968.55MADS-box transcription factor 1 OS=Pisum sativum G... [more]
AGL9_ARADE1.924e-3059.35Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
SEP3_ARATH4.286e-3059.68Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_SINAL3.629e-2957.94Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_SOLLC1.074e-2081.03Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
MADS7_ORYSJ1.382e-2047.24MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI1.382e-2047.24MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS8_ORYSJ3.404e-1947.69MADS-box transcription factor 8 OS=Oryza sativa su... [more]
SEP2_ARATH3.764e-1843.08Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C06_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617387 ID=DN617387; Name=DN617387; organism=Citrus sinensis; type=EST; length=581bp
AAGCGCGGTGATTGAAAATACACGCACACACAACATAGCTATATATCGTC
ATCAGTTTCCCTAAAGTGCAGGATCACTGTAGAGTTATTATAATAAATCC
TTATGATTGCGTGTTCCTAGTCACTGAATAGGGTTGCTTACAAAGGGATA
CAAAGTTGCTGATTCTTATGGATCAACTGCAATACATTGACTGGTAATGC
CCGCCGCTCTCTTAGCATGGTAGCCATCCTTGCATGTAATTATTCAGACT
CGGGCCTGCTGTGACAACCGATATTGGGTCCGCAGGCTGGTATCCAATTT
GCAATGTGGGTTCACATTCCAAGGCGTGAAAGAAGGTATCGCCCTGAGGT
TGAGCTGGTTTAAGCCCATAACCACAATCTTCTGCACTAGGATTCAATTG
AAGTGTGTTCACTTGGTATCCCTCCATCAACCTTTGTTTGAGGGTCTTAT
TTGCTTCGCTCAGCAACTGTTCCTTATGTTGCAGTTCAGTAAGGGTATCC
AGCATGTACTGAGTTCTTGTTGATCTGATCTGCTTCAATGACATATCAAG
CTGCCTTTCAAGTGACTCAAGCTCTTTGCTG
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