DN617372

Overview
NameDN617372
Unique NameDN617372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5718 contig Csv1_Contig5718:1..422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617372 vs. ExPASy Swiss-Prot
Match: K0090_PONAB (Uncharacterized protein KIAA0090 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.142e-22
Identity = 59/141 (41.84%), Postives = 86/141 (60.99%), Query Frame = 2
Query:    8 VLKLVLG--KHNLTAPVSSYSRPEIT-TKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSINPTQAEKEEGIIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTR 421
            VL+L  G  ++N TA  SS  RP++     Q+Y F  S+ A+  T T +GITS+ LLIG     +L+L K  LDPRR   PT+  +EE +IP +  + I  + ++ ++  V  +RGI T P+ LEST LV AYG+D++ TR
Sbjct:  810 VLELYEGTEQYNATA-FSSLDRPQLPQVLQQSYIFPSSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTR 949          
BLAST of DN617372 vs. ExPASy Swiss-Prot
Match: K0090_HUMAN (Uncharacterized protein KIAA0090 OS=Homo sapiens GN=KIAA0090 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.142e-22
Identity = 59/141 (41.84%), Postives = 86/141 (60.99%), Query Frame = 2
Query:    8 VLKLVLG--KHNLTAPVSSYSRPEIT-TKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSINPTQAEKEEGIIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTR 421
            VL+L  G  ++N TA  SS  RP++     Q+Y F  S+ A+  T T +GITS+ LLIG     +L+L K  LDPRR   PT+  +EE +IP +  + I  + ++ ++  V  +RGI T P+ LEST LV AYG+D++ TR
Sbjct:  807 VLELYEGTEQYNATA-FSSLDRPQLPQVLQQSYIFPSSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTR 946          
BLAST of DN617372 vs. ExPASy Swiss-Prot
Match: K0090_MOUSE (Uncharacterized protein KIAA0090 OS=Mus musculus GN=Kiaa0090 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.591e-21
Identity = 54/132 (40.91%), Postives = 81/132 (61.36%), Query Frame = 2
Query:   29 KHNLTAPVSSYSRPEIT-TKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSINPTQAEKEEGIIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTR 421
            ++N TA  SS  RP++     Q+Y F  S+ A+  T T +GITS+ LLIG     +L+L K  LDPRR   PT+  +EE +IP +  + +  + ++ ++  V  +RGI T P+ LEST LV AYG+D++ TR
Sbjct:  820 QYNATA-FSSLDRPQLPQVLQQSYIFPSSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQVHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTR 950          
BLAST of DN617372 vs. ExPASy Swiss-Prot
Match: K0090_CHICK (Uncharacterized protein KIAA0090 homolog OS=Gallus gallus GN=RCJMB04_8i12 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.031e-20
Identity = 58/141 (41.13%), Postives = 85/141 (60.28%), Query Frame = 2
Query:    8 VLKLVLG--KHNLTAPVSSYSRPEIT-TKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSINPTQAEKEEGIIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTR 421
            VL+L  G  ++N TA  SS  RP +     Q+Y F  ++ A+  T T +GITS+ LLIG     +L+L K  LDPRR   PT+  +EE +IP +  + I  + ++ ++  V  +RGI T P+ LEST LV AYG+D++ TR
Sbjct:  797 VLELYEGTEQYNATA-FSSLDRPLLPQVLQQSYIFPSAISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAERFINYNQTVSQIRGIYTSPSGLESTCLVVAYGLDIYQTR 936          
BLAST of DN617372 vs. ExPASy Swiss-Prot
Match: K0090_XENLA (Uncharacterized protein KIAA0090 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.489e-19
Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 2
Query:   53 SSYSRPEIT-TKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSINPTQAEKEEGIIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTR 421
            SS  RP +     Q+Y F  +++A+  T T +GITS+ +LIG     +L+L K  LDPRR   P +  +EE +IP    + I  + ++ ++  +  +RGI T P+ LEST LV AYG+DL+ TR
Sbjct:  817 SSLDRPLLPHVLQQSYIFPSAIRAMQATITERGITSRHILIGLPSGAILSLPKALLDPRRPEIPNEYTREENLIPYTPDIQIHAERFINYNQTISRMRGIYTAPSGLESTCLVVAYGLDLYQTR 940          
BLAST of DN617372 vs. ExPASy Swiss-Prot
Match: YEK7_SCHPO (UFP0650 endoplasmic reticulum membrane protein C25H1.07 OS=Schizosaccharomyces pombe GN=SPAC25H1.07 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.751e-12
Identity = 38/120 (31.67%), Postives = 65/120 (54.17%), Query Frame = 2
Query:   65 RPEITTKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSI-NPTQAEKEEGIIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTR 421
            RP   TK+  Y F   +  + VT+T +GITS+ +L+G   +QV  + +  L P R +  P +   +   IP    +P+     ++++ +V G+  I +     ESTTLV + G+D+F+TR
Sbjct:  720 RPYAFTKA--YIFDREITTLGVTNTPQGITSRDVLLGLSSNQVAMIPQALLSPMRPVLRPNEKANDASFIPYEPIIPLNDDMVLSYNKRVYGVSQITSGITNFESTTLVLSTGLDVFFTR 837          
The following BLAST results are available for this feature:
BLAST of DN617372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
K0090_PONAB7.142e-2241.84Uncharacterized protein KIAA0090 homolog OS=Pongo ... [more]
K0090_HUMAN7.142e-2241.84Uncharacterized protein KIAA0090 OS=Homo sapiens G... [more]
K0090_MOUSE1.591e-2140.91Uncharacterized protein KIAA0090 OS=Mus musculus G... [more]
K0090_CHICK1.031e-2041.13Uncharacterized protein KIAA0090 homolog OS=Gallus... [more]
K0090_XENLA1.489e-1939.52Uncharacterized protein KIAA0090 homolog OS=Xenopu... [more]
YEK7_SCHPO8.751e-1231.67UFP0650 endoplasmic reticulum membrane protein C25... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01B22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617372 ID=DN617372; Name=DN617372; organism=Citrus sinensis; type=EST; length=422bp
CAAAGATGTTTTGAAGCTTGTTCTTGGGAAGCATAATCTTACTGCACCTG
TTTCTTCATATTCACGACCAGAGATTACTACTAAGTCTCAGACTTACTTT
TTCACCCATTCAGTGAAAGCAGTTGCAGTAACATCAACTGCCAAGGGTAT
AACCTCAAAGCAGCTTCTCATTGGTACAATTGGTGATCAGGTTCTGGCAC
TTGATAAGCGTTTCCTGGATCCTCGCCGATCAATTAACCCTACTCAAGCT
GAGAAAGAAGAAGGAATTATACCTCTTGCAGATTCATTGCCAATCATTCC
TCAGTCTTATGTCACACATTCCCTCAAGGTGGAAGGTCTTCGAGGCATAC
TGACGGTGCCTGCCAAGCTGGAATCAACCACGCTCGTTTTTGCATATGGT
GTGGATCTCTTCTACACTCGAC
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