DN617365

Overview
NameDN617365
Unique NameDN617365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length517
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617365 vs. ExPASy Swiss-Prot
Match: NOLC1_RAT (Nucleolar and coiled-body phosphoprotein 1 OS=Rattus norvegicus GN=Nolc1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.483e-18
Identity = 53/141 (37.59%), Postives = 80/141 (56.74%), Query Frame = -1
Query:  104 EKDSEPNDKMEVEESKRRKTEGSEELKIN---DDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFN 517
            E + E  D  + +++   K    ++ K N   D+      K  +   PN   K++     E ++   F+RV+ +E+E  D R+ DNS+ AK GA   +G +A +VL   +G+ FRHEKTKKKRGSYRGG I +Q +SVKF+
Sbjct:  566 ESEEEEEDTEQNKKAAGTKPGSGKKRKHNETADEAATPQSKKVKLQTPNTFPKRK---KGEKRASSPFRRVREEEIE-VDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSVKFD 702          
BLAST of DN617365 vs. ExPASy Swiss-Prot
Match: NOLC1_HUMAN (Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens GN=NOLC1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.447e-17
Identity = 52/137 (37.96%), Postives = 76/137 (55.47%), Query Frame = -1
Query:  104 NDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANG-----SAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFN 499
            N + E EE K+     S+   +   + N   K  E     K + +  N        E ++   F+RV+ +E+E  D R+ DNS+ AK GA   +G +A +VL   +G+ FRHEKTKKKRGSYRGG I +Q +S+KF+
Sbjct:  562 NSEEEEEEKKKAAVVVSKSGSLKKRKQNEAAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIE-VDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFD 697          
BLAST of DN617365 vs. ExPASy Swiss-Prot
Match: SRP40_YEAST (Suppressor protein SRP40 OS=Saccharomyces cerevisiae GN=SRP40 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 4.817e-13
Identity = 47/137 (34.31%), Postives = 68/137 (49.64%), Query Frame = -1
Query:  107 EKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKF 517
            + DS  + ++E +E+   +++  E    +++    T      S+ NK          +    K F RV   ++ F    L DN+Y    GA   +G KA E LG+VRG+DF   K K KRGSYRGG I L+S S KF
Sbjct:  274 DSDSGSSSELETKEATADESKAEETPASSNES---TPSASSSSSANKLNIPAGTDEIKEGQRKHFSRVDRSKINFEAWELTDNTY---KGAAGTWGEKANEKLGRVRGKDFTKNKNKMKRGSYRGGSITLESGSYKF 404          
The following BLAST results are available for this feature:
BLAST of DN617365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NOLC1_RAT8.483e-1837.59Nucleolar and coiled-body phosphoprotein 1 OS=Ratt... [more]
NOLC1_HUMAN1.447e-1737.96Nucleolar and coiled-body phosphoprotein 1 OS=Homo... [more]
SRP40_YEAST4.817e-1334.31Suppressor protein SRP40 OS=Saccharomyces cerevisi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01B19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617365 ID=DN617365; Name=DN617365; organism=Citrus sinensis; type=EST; length=517bp
GATTCTATGAAGACGGTATACATAAAGCAATAACAACAAAGATGACCAAA
TTGAATCGGACTTTGCCACACAAAAACGTCACTGGTCATTCTTCATCAGA
ATAATTGAACTTAACAGAATGTGATTGAAGATCAATCTGCCCTCCCCTAT
AGCTCCCACGCTTCTTTTTGGTCTTTTCATGCCTGAAATCCCTTCCTCTA
ACTTGCCCAAGAACTTCTTGTGCTTTTGCACCATAACCAATCTCCGCACC
ATCCTTTGCCCAGTACGAATTATCTTTAAGCCTTTCATCAGTAAATTCCA
CTTCATCAACTTTTACCCTCTGAAATGCTTTAACCGATTTTGGCTCCGCT
GAACCATTTGCTTGCTTCTTCCTCGTCTTATTTGGGGCAGATTTCTCTTC
ATTTTTATCAGTCCCATTTACTTGATCATCATTTATCTTCAGTTCTTCTG
AACCTTCTGTCTTCCTACGTTTGGATTCTTCAACTTCCATTTTGTCATTA
GGCTCAGAATCTTTTTC
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