DN617304

Overview
NameDN617304
Unique NameDN617304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5707 contig Csv1_Contig5707:1..507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617304 vs. ExPASy Swiss-Prot
Match: SPC3B_ARATH (Signal peptidase complex subunit 3B OS=Arabidopsis thaliana GN=At5g27430 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.010e-68
Identity = 125/143 (87.41%), Postives = 131/143 (91.61%), Query Frame = 2
Query:   77 MHSFGYRANALLTFAVTILALMCAIASLSDNLNTPSPSAQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFSIHTSNKYRFIDQGHNLRGKEFNLTLHWHV 505
            MHSFGYRANALLTFAVTILA +CAIAS SDN +  +PSAQI+ILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQ+F FVAAEYET KNALNQVSLWDAIIP KE AKF I  SNKYRFIDQGHNLRGK+FNLTLHWHV
Sbjct:    1 MHSFGYRANALLTFAVTILAFICAIASFSDNFSNQNPSAQIQILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQVFAFVAAEYETSKNALNQVSLWDAIIPEKEHAKFWIQISNKYRFIDQGHNLRGKDFNLTLHWHV 143          
BLAST of DN617304 vs. ExPASy Swiss-Prot
Match: SPC3A_ARATH (Signal peptidase complex subunit 3A OS=Arabidopsis thaliana GN=At3g05230 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 9.780e-64
Identity = 116/143 (81.12%), Postives = 129/143 (90.21%), Query Frame = 2
Query:   77 MHSFGYRANALLTFAVTILALMCAIASLSDNLNTPSPSAQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFSIHTSNKYRFIDQGHNLRGKEFNLTLHWHV 505
            MH+FGYRANALLTFAVT LA +CAIAS SD  +  +PSA+I+ILNIN F+KQ HGNDEVSLTL+I+ADLQSLFTWNTKQ+F+FVAAEYETPKN+LNQVSLWDAIIPAKE AKF I  SNKYRFIDQG NLRGK+FNLTLHWHV
Sbjct:    1 MHTFGYRANALLTFAVTALAFICAIASFSDKFSNQNPSAEIQILNINRFKKQSHGNDEVSLTLDISADLQSLFTWNTKQVFVFVAAEYETPKNSLNQVSLWDAIIPAKEHAKFRIQVSNKYRFIDQGQNLRGKDFNLTLHWHV 143          
BLAST of DN617304 vs. ExPASy Swiss-Prot
Match: SPCS3_ORYSJ (Probable signal peptidase complex subunit 3 OS=Oryza sativa subsp. japonica GN=Os01g0131800 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.400e-24
Identity = 61/143 (42.66%), Postives = 75/143 (52.45%), Query Frame = 2
Query:   77 MHSFGYRANALLTFAVTILALMCAIASLSDNLNTPSPSAQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFSIHTSNKYRFIDQGHNLRGKEFNLTLHWHV 505
            MHS+  R     T A  +L   C  AS  D  + PS  AQ  +  IN F KQ +GND+V                     F+F+ AEYE  KN+LNQVSLWD IIP K+ A   +   +KY  IDQG +LRGK+  L LHWHV
Sbjct:    1 MHSWVQRLLTTATTAALLLLAACCAASALDAFHVPSVQAQAHVTKINRFHKQLNGNDKV---------------------FVFLTAEYENSKNSLNQVSLWDHIIPDKDKANLQVEVKSKYPLIDQGSSLRGKKVQLVLHWHV 122          
BLAST of DN617304 vs. ExPASy Swiss-Prot
Match: SPCS3_CHICK (Signal peptidase complex subunit 3 OS=Gallus gallus GN=SPC22 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.132e-19
Identity = 56/144 (38.89%), Postives = 84/144 (58.33%), Query Frame = 2
Query:   95 RANALLTFAVTILALM---CAIASLSDNLNTPSPSA--QIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAK-FSIHTSNKYRFIDQGHNLRG-KEFNLTLHWHV 505
            RAN+L  F+++++A +   C I +     + P   A  ++ + N+  F      +D   +T +ITADLQS+F WN KQLF++++AEY T  NALNQV LWD II   +  + F     +KY F D G+ L+G +   LTL W+V
Sbjct:    7 RANSLFAFSLSVMAALTFGCFITTAFKERSVPVSIAVSRVTLRNVEDFTGPRERSDLAFVTFDITADLQSIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIILRGDNPRLFLKDMKSKYFFFDDGNGLKGNRNVTLTLSWNV 150          
BLAST of DN617304 vs. ExPASy Swiss-Prot
Match: SPCS3_HUMAN (Signal peptidase complex subunit 3 OS=Homo sapiens GN=SPCS3 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.135e-18
Identity = 53/144 (36.81%), Postives = 84/144 (58.33%), Query Frame = 2
Query:   95 RANALLTFAVTILALM---CAIASLSDNLNTPSPS--AQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFSI-HTSNKYRFIDQGHNLRG-KEFNLTLHWHV 505
            RAN+L  F+++++A +   C I +   + + P     ++I + N+  F      +D   +T +ITADL+++F WN KQLF++++AEY T  NALNQV LWD I+   +  K  +     KY F D G+ L+G +   LTL W+V
Sbjct:    7 RANSLFAFSLSVMAALTFGCFITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRERSDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLLKDMKTKYFFFDDGNGLKGNRNVTLTLSWNV 150          
BLAST of DN617304 vs. ExPASy Swiss-Prot
Match: SPCS3_CANFA (Signal peptidase complex subunit 3 OS=Canis familiaris GN=SPCS3 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.135e-18
Identity = 53/144 (36.81%), Postives = 84/144 (58.33%), Query Frame = 2
Query:   95 RANALLTFAVTILALM---CAIASLSDNLNTPSPS--AQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFSI-HTSNKYRFIDQGHNLRG-KEFNLTLHWHV 505
            RAN+L  F+++++A +   C I +   + + P     ++I + N+  F      +D   +T +ITADL+++F WN KQLF++++AEY T  NALNQV LWD I+   +  K  +     KY F D G+ L+G +   LTL W+V
Sbjct:    7 RANSLFAFSLSVMAALTFGCFITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRERSDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLLKDMKTKYFFFDDGNGLKGNRNVTLTLSWNV 150          
BLAST of DN617304 vs. ExPASy Swiss-Prot
Match: SPCS3_BOVIN (Signal peptidase complex subunit 3 OS=Bos taurus GN=SPCS3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.135e-18
Identity = 53/144 (36.81%), Postives = 84/144 (58.33%), Query Frame = 2
Query:   95 RANALLTFAVTILALM---CAIASLSDNLNTPSPS--AQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFSI-HTSNKYRFIDQGHNLRG-KEFNLTLHWHV 505
            RAN+L  F+++++A +   C I +   + + P     ++I + N+  F      +D   +T +ITADL+++F WN KQLF++++AEY T  NALNQV LWD I+   +  K  +     KY F D G+ L+G +   LTL W+V
Sbjct:    7 RANSLFAFSLSVMAALTFGCFITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRERSDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLLKDMKTKYFFFDDGNGLKGNRNVTLTLSWNV 150          
BLAST of DN617304 vs. ExPASy Swiss-Prot
Match: SPCS3_MOUSE (Signal peptidase complex subunit 3 OS=Mus musculus GN=Spcs3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.211e-18
Identity = 53/150 (35.33%), Postives = 84/150 (56.00%), Query Frame = 2
Query:   77 MHSFGYRANALLTFAVTILALM---CAIASLSDNLNTPSPS--AQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFSI-HTSNKYRFIDQGHNLRG-KEFNLTLHWHV 505
            M+S   RAN+L  F ++++A +   C + +   + + P     ++I +  +  F      +D   +T +I+ADL+  F WN KQLF++++AEY T  NA+NQV LWD I+   E  K ++    +KY F D GH L+G +   LTL W V
Sbjct:    1 MNSLLSRANSLFAFTLSVMAALTLGCILTTAFKDRSAPVRLHVSRILLKKVEDFTGPRKKSDLGFITFHISADLEKTFDWNVKQLFLYLSAEYSTKSNAVNQVVLWDKILLRGENPKLNLKDVKSKYFFFDDGHGLKGNRNVTLTLSWQV 150          
BLAST of DN617304 vs. ExPASy Swiss-Prot
Match: SPCS3_RAT (Signal peptidase complex subunit 3 OS=Rattus norvegicus GN=Spcs3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.384e-17
Identity = 52/150 (34.67%), Postives = 84/150 (56.00%), Query Frame = 2
Query:   77 MHSFGYRANALLTFAVTILALM---CAIASLSDNLNTPSPS--AQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFSI-HTSNKYRFIDQGHNLRG-KEFNLTLHWHV 505
            M++   RAN+L  F ++++A +   C + +   + + P     ++I +  +  F      +D   +T +I+ADL+  F WN KQLF++++AEY T  NA+NQV LWD I+   E  K ++    +KY F D GH L+G +   LTL W V
Sbjct:    1 MNTLLSRANSLFAFTLSVMAALTLGCILTTAFKDRSAPVRLHVSRILLKKVEDFTGPRKKSDLGFITFHISADLEKTFDWNVKQLFLYLSAEYSTKSNAVNQVVLWDKILLRGENPKLNLKDVKSKYFFFDDGHGLKGNRNVTLTLSWQV 150          
BLAST of DN617304 vs. ExPASy Swiss-Prot
Match: SPCS3_DICDI (Signal peptidase complex subunit 3 OS=Dictyostelium discoideum GN=spcs3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.998e-16
Identity = 50/144 (34.72%), Postives = 78/144 (54.17%), Query Frame = 2
Query:   77 MHSFGYRANALLTFAVTILALMCAIASLSDNLNTPSPSAQIEILNINWFQKQPHGNDEVS-LTLNITADLQSLFTWNTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFSIHTSNKYRFIDQGHNLRGKEFNLTLHWHV 505
            MHS   RAN ++ F   +L  +  +  LS    +      I++  I+ F  Q   N E S +++++ A+L+ LF WNTK LF++V AEY T +N L+QV +WD I+  K  A       +KY  I+QG  L+     LT +++V
Sbjct:    1 MHSLSQRANTIVCFGGIVLVGVLLLNVLSRAFFSDHVDVDIKLNEIHRFNTQR--NFEYSFISIDLDANLEPLFNWNTKMLFLYVTAEYRTKQNVLSQVVVWDHILTEKSKANIHEKRLSKYPIINQGLGLKNNTIKLTFNYNV 142          
The following BLAST results are available for this feature:
BLAST of DN617304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SPC3B_ARATH1.010e-6887.41Signal peptidase complex subunit 3B OS=Arabidopsis... [more]
SPC3A_ARATH9.780e-6481.12Signal peptidase complex subunit 3A OS=Arabidopsis... [more]
SPCS3_ORYSJ3.400e-2442.66Probable signal peptidase complex subunit 3 OS=Ory... [more]
SPCS3_CHICK1.132e-1938.89Signal peptidase complex subunit 3 OS=Gallus gallu... [more]
SPCS3_HUMAN2.135e-1836.81Signal peptidase complex subunit 3 OS=Homo sapiens... [more]
SPCS3_CANFA2.135e-1836.81Signal peptidase complex subunit 3 OS=Canis famili... [more]
SPCS3_BOVIN2.135e-1836.81Signal peptidase complex subunit 3 OS=Bos taurus G... [more]
SPCS3_MOUSE6.211e-1835.33Signal peptidase complex subunit 3 OS=Mus musculus... [more]
SPCS3_RAT1.384e-1734.67Signal peptidase complex subunit 3 OS=Rattus norve... [more]
SPCS3_DICDI1.998e-1634.72Signal peptidase complex subunit 3 OS=Dictyosteliu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A12_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617304 ID=DN617304; Name=DN617304; organism=Citrus sinensis; type=EST; length=507bp
CTTCTCTCTCAGACCAAAAATCAAACGACAGCAGCTGCAACAGCGGCAGG
GAACAAAAACAGGAAAAAAGAAAAAAATGCATTCGTTTGGGTACAGAGCC
AACGCTCTGCTGACGTTCGCCGTGACGATTCTGGCGCTAATGTGCGCCAT
CGCTTCTCTTTCTGATAACCTTAACACTCCCTCTCCCTCCGCTCAAATTG
AGATATTGAATATCAATTGGTTTCAGAAGCAGCCACATGGAAACGACGAG
GTCAGCCTGACATTGAATATAACAGCTGACTTGCAATCACTATTTACATG
GAACACAAAACAGCTTTTCATTTTTGTGGCAGCTGAGTATGAAACCCCAA
AGAATGCCTTAAACCAAGTGTCTCTTTGGGATGCTATAATACCTGCAAAA
GAGTTTGCTAAGTTTTCCATTCATACCTCGAACAAATATCGTTTCATTGA
TCAGGGACACAATCTTCGAGGTAAAGAATTCAACTTGACATTGCACTGGC
ACGTCAT
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