DN135267

Overview
NameDN135267
Unique NameDN135267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135267_ssr438 microsatellite DN135267_ssr438:438..449. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2589 contig Csv1_Contig2589:449..934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135267 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.203e-20
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  143 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 298
            TA C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of DN135267 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.203e-20
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  143 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 298
            TA C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of DN135267 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.573e-20
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 2
Query:  128 MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 298
            MAD STATC+DI+LA+ILPPLGVF KFGC  EFWICLLLT  GY+PGIIYAV+ ITK
Sbjct:    1 MAD-STATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56          
BLAST of DN135267 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.270e-19
Identity = 41/53 (77.36%), Postives = 49/53 (92.45%), Query Frame = 2
Query:  140 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 298
            STAT V+I+LA+ILPPLGVFLKFGCK EFWICL+LT+ GY+PGI+YA+Y ITK
Sbjct:    2 STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54          
BLAST of DN135267 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.871e-19
Identity = 40/53 (75.47%), Postives = 49/53 (92.45%), Query Frame = 2
Query:  140 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 298
            STAT VDI++A++LPPLGVFL+FGC  EFWICL+LT+LGYIPGIIYA+Y +TK
Sbjct:    2 STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54          
BLAST of DN135267 vs. ExPASy Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.166e-15
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 2
Query:  128 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 292
            MA G   T ++ILLA+ILPPLGVFL+FGC   EF ICLLLTILGY+PGIIYAVY +
Sbjct:    1 MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVL 56          
BLAST of DN135267 vs. ExPASy Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.166e-15
Identity = 34/51 (66.67%), Postives = 46/51 (90.20%), Query Frame = 2
Query:  140 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 292
            ++AT ++++LA+ILPP+GVFL++G   EFWICLLLT+LGYIPGIIYAVY +
Sbjct:    2 ASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVL 52          
BLAST of DN135267 vs. ExPASy Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:  143 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 292
            +AT ++++LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of DN135267 vs. ExPASy Swiss-Prot
Match: ESI3_LOPEL (Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:  143 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 292
            +AT ++++LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of DN135267 vs. ExPASy Swiss-Prot
Match: PMP3_DEBHA (Plasma membrane proteolipid 3 OS=Debaryomyces hansenii GN=PMP3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.206e-12
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 2
Query:  149 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 298
            TC DI   ++A+ILPPLGVFL+ GC + FWI ++LTILGYIPGII+A+Y I K
Sbjct:    4 TCSDIFKIIIAIILPPLGVFLERGCASSFWINIVLTILGYIPGIIHALYVILK 56          
The following BLAST results are available for this feature:
BLAST of DN135267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
LTI6B_ORYSJ1.203e-2084.62Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI1.203e-2084.62Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
LTI6A_ORYSJ4.573e-2078.95Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]
RCI2B_ARATH2.270e-1977.36Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
RCI2A_ARATH3.871e-1975.47Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
OSR8_ORYSJ1.166e-1571.43Hydrophobic protein OSR8 OS=Oryza sativa subsp. ja... [more]
LT02_HORVU1.166e-1566.67Low temperature-induced protein lt101.2 OS=Hordeum... [more]
LT01_HORVU1.289e-1468.00Low temperature-induced protein lt101.1 OS=Hordeum... [more]
ESI3_LOPEL1.289e-1468.00Salt stress-induced hydrophobic peptide ESI3 OS=Lo... [more]
PMP3_DEBHA1.206e-1264.15Plasma membrane proteolipid 3 OS=Debaryomyces hans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca08g11 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08g11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135267 ID=DN135267; Name=DN135267; organism=Citrus sinensis; type=EST; length=489bp
AAAATACCAAGTACAAATAACAAAAGCAGTTACTCAAACCCTTAAGCACT
TCTTTAATCAAAGTTCTTGTTTTTTGACTCTAAATTTTATTTTATTCCAT
TTTACACTTTTTAAGAATCAATCAAAGATGGCAGATGGAAGCACAGCAAC
ATGCGTAGATATTCTCTTGGCTGTTATCTTGCCTCCTCTTGGTGTCTTTC
TCAAATTTGGTTGCAAGGCTGAGTTTTGGATCTGTTTGCTCTTGACAATT
CTGGGGTATATCCCTGGAATTATTTATGCTGTTTATGCCATCACCAAGAA
GTGATCTCTCGTCTTCATCTATTGAGAGATCCCAAGGGCATCATGTGTTA
TGAGATCTTTTATTTACAACCGTTAGATGGGCAGCTCTGATTTGATGTAG
CCAGATGGGTTCTGATTCTTAATCAACTGGGGTGTGCGTGTGTGTGTGTG
GGAGAGAGCACTTGTTTCGTTTGTTAAATCTTTATCGTT
back to top