DN135261

Overview
NameDN135261
Unique NameDN135261
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length230
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3956 contig Csv1_Contig3956:1103..1331. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN135261 vs. ExPASy Swiss-Prot
Match: SCL13_ARATH (Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.562e-19
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:   34 GLDIVGKRLSEFAASCNVSFEFQDTAMTACEVERQHLRVQPGEAVVVSFPFVLHHMPDESVSTEN 228
            GL +VG+RL+  A SC V FEF D  M+ C+V+R+HL ++PG AVVV+FP+VLHHMPDESVS EN
Sbjct:  127 GLSLVGERLATLAQSCGVPFEFHDAIMSGCKVQREHLGLEPGFAVVVNFPYVLHHMPDESVSVEN 191
[Close]
BLAST of DN135261 vs. ExPASy Swiss-Prot
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.072e-15
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:   34 GLDIVGKRLSEFAASCNVSFEFQDTAMTACEVERQHLRVQPGEAVVVSFPFVLHHMPDESVSTEN 228
            GL IVG RL++ A   NV FEF   +++  EV+ ++L V+PGEA+ V+F FVLHHMPDESVSTEN
Sbjct:  275 GLSIVGNRLAKLAKQFNVPFEFNSVSVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTEN 339
[Close]
BLAST of DN135261 vs. ExPASy Swiss-Prot
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.294e-14
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   34 GLDIVGKRLSEFAASCNVSFEFQDTAMTACEVERQHLRVQPGEAVVVSFPFVLHHMPDESVSTEN 228
            GL++VG+RL + A  C V FEF   A+   EVE + L V+ GEA+ V+FP VLHHMPDESV+ EN
Sbjct:  382 GLELVGQRLGKLAEMCGVPFEFHGAALCCTEVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVEN 446
[Close]
BLAST of DN135261 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.324e-14
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   34 GLDIVGKRLSEFAASCNVSFEFQDTAMTACEVERQHLRVQPGEAVVVSFPFVLHHMPDESVSTEN 228
            GL++VG+RLS  A+ C V FEF   A++  +VE  HL V PGEA+ V+F   LHH+PDESVST N
Sbjct:  329 GLELVGRRLSHIASLCKVPFEFHPLAISGSKVEAAHLGVIPGEALAVNFTLELHHIPDESVSTAN 393
The following BLAST results are available for this feature:
BLAST of DN135261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SCL13_ARATH7.562e-1963.08Scarecrow-like protein 13 OS=Arabidopsis thaliana ... [more]
PAT1_ARATH5.072e-1558.46Scarecrow-like transcription factor PAT1 OS=Arabid... [more]
SCL5_ARATH4.294e-1455.38Scarecrow-like protein 5 OS=Arabidopsis thaliana G... [more]
CIGR2_ORYSJ7.324e-1455.38Chitin-inducible gibberellin-responsive protein 2 ... [more]
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Properties
Property NameValue
Genbank descriptionwca08g03 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08g03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135261 ID=DN135261; Name=DN135261; organism=Citrus sinensis; type=EST; length=230bp
ATGATTCCCAATCAACCCATGCTCGTGGNNNGAGGACTTGATATTGTAGG
GAAGAGACTGTCGGAGTTTGCTGCATCCTGCAATGTCTCATTTGAATTCC
AAGATACTGCCATGACTGCTTGTGAGGTTGAACGACAACATCTAAGGGTT
CAACCTGGGGAAGCTGTGGTGGTGAGTTTTCCTTTTGTGCTGCACCACAT
GCCTGATGAGAGTGTGAGTACTGAGAATCA
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