DN135204

Overview
NameDN135204
Unique NameDN135204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5699 contig Csv1_Contig5699:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARF_DICDI (Probable cytosolic Fe-S cluster assembly factor narfl OS=Dictyostelium discoideum GN=narfl PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.966e-42
Identity = 96/209 (45.93%), Postives = 130/209 (62.20%), Query Frame = 3
Query:  153 EKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVSTS----------SKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG----------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQS--QESDDERSNS----SLPMLSSACPGWICYAE 695
            +KFS  L++ +  D+I PSQ C+  V ++K+      K Q+ +           +K+  E   I+L DCLACSGCITSAE+V++  QS+ EFL N+N            K ++I+LSPQSRASLA HF IS L V KKL TF K L +  +FD+S SRD +L+E+  EF+ARYK++    ++DE +       LPMLSSACPGWICYAE
Sbjct:    6 DKFSSVLKLTEF-DYIVPSQICIKPVEIEKSNDSGNSKIQIESDGRYVEISEDGTKKSLEKATITLNDCLACSGCITSAESVLITAQSISEFLLNVNNNNDSNNNQDEKKTIVITLSPQSRASLASHFKISTLSVVKKLKTFFKKLNINYLFDSSFSRDFSLLESAAEFVARYKKTYINNNNDEETGKLEPFPLPMLSSACPGWICYAE 213          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARFL_MOUSE (Cytosolic Fe-S cluster assembly factor NARFL OS=Mus musculus GN=Narfl PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.673e-38
Identity = 87/205 (42.44%), Postives = 124/205 (60.49%), Query Frame = 3
Query:  147 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVSTSSK-QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            M+  FS  L++ DL DFI PSQNC+  +K A  K P                QV+   + Q+ E  K+SL DCLACSGC+TSAETV++ +QS +E    ++  K         V++S+SPQSRASLA  F + P    +KLT+F K +GV  +FDT+ +R+ +L+E+  EF+ R++     +   S  +LP+L+SACPGWICYAE
Sbjct:    1 MASPFSGALQLTDLDDFIGPSQNCIKPVKVA--KKPGSGIAKIHIEDDGSYFQVNQDGRTQKLEKAKVSLNDCLACSGCVTSAETVLITQQSHEELRKVLDANKEAAPGQQRLVVVSISPQSRASLAARFRLDPTDTARKLTSFFKKIGVHFVFDTAFARNFSLLESQKEFVQRFR-----EQANSREALPVLASACPGWICYAE 198          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARFL_XENTR (Cytosolic Fe-S cluster assembly factor narfl OS=Xenopus tropicalis GN=narfl PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.166e-37
Identity = 85/203 (41.87%), Postives = 120/203 (59.11%), Query Frame = 3
Query:  147 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVSTSSK----------QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            M+  FS  L++ DL DFI PSQ C+  + ++K   +   K Q+               ++ E  KI+L DCLACSGC+TSAET+++ +QS +E    + + K         V++S+SPQS ASLA  F +      +KLT F K LGV  +FDT+ SR+ +L+E+  EFI R+K+ +E        SLPML+SACPGWICYAE
Sbjct:    1 MASSFSGVLQLTDLDDFIGPSQECIKPIKVEKKAGRAAAKIQIEDDGSYVQINPEGAARKLEKAKITLNDCLACSGCVTSAETILITQQSHEELYKILKQNKTENPLEHKVVVVSVSPQSWASLAARFNLIMQDTAQKLTAFFKQLGVHHVFDTNFSRNFSLLESQREFIQRFKRQKE-----DKKSLPMLASACPGWICYAE 198          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARFL_RAT (Cytosolic Fe-S cluster assembly factor NARFL OS=Rattus norvegicus GN=Narfl PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.349e-36
Identity = 84/205 (40.98%), Postives = 122/205 (59.51%), Query Frame = 3
Query:  147 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVSTSSK-QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            M+  FS  L++ DL DFI PSQ+C+  +  A  K P                QV+   + Q+ E  K+SL DCLACSGC+TSAET+++ +QS +E    ++  K         V++S+SPQSRASLA  F +      +KLT+F K +GV  +FDT+ +R+ +L+E+  EF+ R++     +   S  +LPML+SACPGWICYAE
Sbjct:    1 MASPFSGALQLTDLDDFIGPSQSCIKPVTVA--KKPGSGIAKIHIEDDGSYFQVNPDGRSQKLEKAKVSLNDCLACSGCVTSAETILITQQSHEELRKVLDANKVAAPGQQRLVVVSVSPQSRASLAARFQLDSTDTARKLTSFFKKIGVHFVFDTAFARNFSLLESQKEFVQRFR-----EQANSREALPMLASACPGWICYAE 198          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARFL_PONAB (Cytosolic Fe-S cluster assembly factor NARFL OS=Pongo abelii GN=NARFL PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.349e-36
Identity = 83/203 (40.89%), Postives = 120/203 (59.11%), Query Frame = 3
Query:  147 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVSTSSK----------QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV--------IISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            M+  FS  L++ DL DFI PSQ C+  V ++K       K ++               ++ E  K+SL DCLACSGCITSAETV++ +QS +E    ++  K V        ++S+SPQSRASLA  F ++P    +KLT+F K +GV  +FDT+ SR  +L+E+  EF+ R++   +        +LP+L+SACPGWICYAE
Sbjct:    1 MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRAGSGVAKIRIEDDGSYFQINQDGGTRRLEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMVAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQAD-----CKQALPLLASACPGWICYAE 198          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARFL_HUMAN (Cytosolic Fe-S cluster assembly factor NARFL OS=Homo sapiens GN=NARFL PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.349e-36
Identity = 83/203 (40.89%), Postives = 120/203 (59.11%), Query Frame = 3
Query:  147 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVSTSSK----------QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            M+  FS  L++ DL DFI PSQ C+  V ++K       K ++               ++ E  K+SL DCLACSGCITSAETV++ +QS +E    ++  K         V++S+SPQSRASLA  F ++P    +KLT+F K +GV  +FDT+ SR  +L+E+  EF+ R++   +        +LP+L+SACPGWICYAE
Sbjct:    1 MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRAGSGVAKIRIEDDGSYFQINQDGGTRRLEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQAD-----CRQALPLLASACPGWICYAE 198          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARFL_BOVIN (Cytosolic Fe-S cluster assembly factor NARFL OS=Bos taurus GN=NARFL PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.712e-36
Identity = 84/203 (41.38%), Postives = 121/203 (59.61%), Query Frame = 3
Query:  147 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQV------------STSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            M+  FS  L++ DL DFIAPSQ+C+  +K          ++                 ++ E  KISL DCLACSGC+TSAETV++ +QS +E    +   K         V+IS+SPQSRASLA  F ++P    +KLT F K +G   +FDT+ SR+ +L+E+  EF+ R++   ++D E+   +LP+L+SACPGWICYAE
Sbjct:    1 MASPFSGALQLTDLDDFIAPSQDCIKPMKVDRRPGSGVAKIHIEDDGSYFQVSQDGGMKKLEKAKISLDDCLACSGCVTSAETVLITQQSHEELRKVLGANKTAAPDQQKLVVISVSPQSRASLAVRFQLNPTDTARKLTAFFKKIGAHYVFDTAFSRNFSLLESQREFVRRFR--GQADPEQ---ALPVLTSACPGWICYAE 198          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARF_NEMVE (Probable cytosolic Fe-S cluster assembly factor v1g210509 OS=Nematostella vectensis GN=v1g210509 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.837e-34
Identity = 82/208 (39.42%), Postives = 120/208 (57.69%), Query Frame = 3
Query:  147 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK---KATFKNPDKPQVSTSS----------KQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG------------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            M+  FS  L++ +L DFI PSQ C+  +K   K   K   K ++ +            K + +  +I+L DCLACSGCIT+AE+V++ +QS DE    ++              K V+IS+SPQSRAS+A  F ++     KKL+ F K LGV  +FDT+ +RD +L E+  EF+ R++  Q+ D+       PML+SACPGW+CYAE
Sbjct:    1 MAAHFSGALQLTNLDDFITPSQECIKPVKIEKKPGAKGLAKIKIESDGSYVQLSEDGGKSKLQKAEITLNDCLACSGCITTAESVLITQQSQDELFKILDSNRKLVKEGKGDVQKLVVISISPQSRASIAAKFNLTINDAAKKLSAFFKQLGVHYVFDTTFARDFSLAESQREFVRRFRAYQQGDE----GCTPMLASACPGWMCYAE 204          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARF_ANOGA (Probable cytosolic Fe-S cluster assembly factor AGAP009023 OS=Anopheles gambiae GN=AGAP009023 PE=3 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.246e-32
Identity = 79/203 (38.92%), Postives = 113/203 (55.67%), Query Frame = 3
Query:  156 KFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQV-----------STSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG------------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            +FS  L++ DL DFI PSQ C+  +K  T K+    ++           S+S  Q+ E V+I+L DCLACSGCITSAE V++ +QS +E L  +N              K V+ ++S Q   SLA  + ++P   F+ +  + K LG   + DT  + DL LIE  NEFI RY  +++         LPML+S+CPGW+CYAE
Sbjct:    3 RFSSALQLTDLDDFITPSQECIKPVKIETSKSKTGAKITIQEDGSYVQESSSGIQKLEKVEITLADCLACSGCITSAEGVLISQQSQEELLRVMNANNLAKLNNQRDEIKFVVFTVSQQPILSLARKYNLTPEDTFEHIAGYFKKLGADMVVDTKIADDLALIECRNEFIERYNTNRK--------LLPMLASSCPGWVCYAE 197          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARF_AEDAE (Probable cytosolic Fe-S cluster assembly factor AAEL012261 OS=Aedes aegypti GN=AAEL012261 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.004e-32
Identity = 73/203 (35.96%), Postives = 118/203 (58.13%), Query Frame = 3
Query:  156 KFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-----------QVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG------------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            +FS  L++ DL DFI PSQ C+  +K  T K+               Q ++S  Q+ E V+I+L DCLACSGCITSAE V++ +QS +E L  +N+             + ++ +++ Q   SLA+ + + P + F+++  + K LG   + DT  + DL+LIE+ NEF+ R+  +++        S+PM++S+CPGW+CYAE
Sbjct:    3 RFSGALQLTDLDDFITPSQECIKPVKIETNKSKTGSKITIQDDGSYMQATSSGLQKLEKVEITLADCLACSGCITSAEGVLITQQSQEELLKVMNENNLAKLNNQLDSVRYIVFTVAQQPILSLAKRYNLGPEETFERVAGYFKKLGADMVVDTKIADDLSLIESRNEFVERFNTNRQ--------SMPMMASSCPGWVCYAE 197          
The following BLAST results are available for this feature:
BLAST of DN135204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
NARF_DICDI6.966e-4245.93Probable cytosolic Fe-S cluster assembly factor na... [more]
NARFL_MOUSE4.673e-3842.44Cytosolic Fe-S cluster assembly factor NARFL OS=Mu... [more]
NARFL_XENTR5.166e-3741.87Cytosolic Fe-S cluster assembly factor narfl OS=Xe... [more]
NARFL_RAT3.349e-3640.98Cytosolic Fe-S cluster assembly factor NARFL OS=Ra... [more]
NARFL_PONAB3.349e-3640.89Cytosolic Fe-S cluster assembly factor NARFL OS=Po... [more]
NARFL_HUMAN3.349e-3640.89Cytosolic Fe-S cluster assembly factor NARFL OS=Ho... [more]
NARFL_BOVIN5.712e-3641.38Cytosolic Fe-S cluster assembly factor NARFL OS=Bo... [more]
NARF_NEMVE1.837e-3439.42Probable cytosolic Fe-S cluster assembly factor v1... [more]
NARF_ANOGA2.246e-3238.92Probable cytosolic Fe-S cluster assembly factor AG... [more]
NARF_AEDAE5.004e-3235.96Probable cytosolic Fe-S cluster assembly factor AA... [more]

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Properties
Property NameValue
Genbank descriptionwca07g11 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07g11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135204 ID=DN135204; Name=DN135204; organism=Citrus sinensis; type=EST; length=696bp
AGGTCCTCCATTTTTNNNNTTTCTACAGAATTAATCTACCCCCTCCAAAA
AATAAAAAATAAAAAAATCCCTAAAATTGAGCTCTGAATTAATCGCCGTT
TGTTTAATCAATTCGGCGGATGCAGTGTTAAGTTGAAGAAAGAGAAATGT
CAGAGAAGTTCTCGCCTACGCTGAGAATCGGAGATCTCAGCGATTTTATA
GCACCGTCTCAGAATTGCGTTGTTTCTCTTAAAAAAGCTACCTTTAAAAA
CCCTGATAAGCCCCAGGTTTCTACTTCCAGCAAGCAGCAGGCTGAACCGG
TGAAAATCTCACTCAAGGATTGCTTAGCTTGCAGTGGATGCATTACGTCA
GCGGAGACTGTGATGCTTGAGAAGCAGAGTTTGGATGAGTTCCTATCAAA
TATTAATAAAGGAAAGGCTGTTATTATTTCCCTTTCTCCACAGTCAAGAG
CTTCCCTTGCTGAACATTTTGGCATCTCTCCTCTTCAGGTTTTCAAGAAA
CTTACAACATTCTTGAAGTCGCTTGGAGTGAAGAGCATCTTTGATACGAG
CTGCAGTAGAGACTTAACGCTTATTGAAGCTTGCAATGAGTTTATTGCTC
GCTACAAACAAAGCCAAGAATCTGATGATGAAAGGTCCAATTCATCCCTG
CCCATGCTGTCATCGGCATGTCCAGGGTGGATATGCTATGCTGAAA
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