DN135201

Overview
NameDN135201
Unique NameDN135201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length397
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13741 contig Csv1_Contig13741:450..845. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN135201 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.101e-22
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    4 QIIKXXTIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 168
            QIIK  T+PAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA +PNLFM
Sbjct:  124 QIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178
[Close]
BLAST of DN135201 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.183e-22
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    4 QIIKXXTIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 168
            QIIK  T+PAKLCKRE TKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA++PNLFM
Sbjct:  124 QIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178
[Close]
BLAST of DN135201 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.040e-21
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    4 QIIKXXTIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 168
            QIIK  TIPAKLCKRES+KQFHNSKIKFPLV RK+RPPSRKL+T YKA+RPNLFM
Sbjct:  124 QIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178
[Close]
BLAST of DN135201 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.664e-18
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    4 QIIKXXTIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 168
            QIIK  T+  KLCKR++TKQFH S IKFPLV+RKVRPP+RKL+TT+KA+RPNLFM
Sbjct:  124 QIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178
The following BLAST results are available for this feature:
BLAST of DN135201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
R18A2_ARATH1.101e-2289.0960S ribosomal protein L18a-2 OS=Arabidopsis thalia... [more]
R18A3_ARATH4.183e-2287.2760S ribosomal protein L18a-3 OS=Arabidopsis thalia... [more]
RL18A_CASSA6.040e-2185.4560S ribosomal protein L18a OS=Castanea sativa GN=R... [more]
RL18A_ORYSJ3.664e-1874.5560S ribosomal protein L18a OS=Oryza sativa subsp. ... [more]
back to top
Properties
Property NameValue
Genbank descriptionwca07g08 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07g08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135201 ID=DN135201; Name=DN135201; organism=Citrus sinensis; type=EST; length=397bp
GGGCAAATTATCAAGNNNNNTACCATCCCTGCCAAGCTATGCAAGAGAGA
AAGCACCAAGCAGTTCCACAATTCGAAAATCAAGTTTCCCTTGGTGTTCA
GGAAGGTGAGACCACCAAGCAGGAAGCTGAGGACCACATACAAAGCAACA
AGGCCTAACTTGTTTATGTAACTCTCTTATCATTTGATAATTGAGACTTC
AAGAGGGTTTAACAGTGGATATCTATCTATTTTTCTAAGAATATTTTTGG
TAGTTACCTTTATGTCAGTTGTTTTTGTTCAACGGAGACCTGTTTTTATG
TTGAGAATATTAGGTGTTGAGACTAGCGAACCTGATCTTTGGGATTGCAA
AATTTATGTTTTTGTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top