DN135180

Overview
NameDN135180
Unique NameDN135180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4023 contig Csv1_Contig4023:1..632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.216e-84
Identity = 148/191 (77.49%), Postives = 163/191 (85.34%), Query Frame = 3
Query:   75 MKHNNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            MKHNNVIPNGHFKKHWQNYVKTWFN P                IFPRPT+GPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT+ELVK+T +MKSFKA+DK+R+ER N+RH G
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAG 191          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 1.588e-82
Identity = 148/191 (77.49%), Postives = 159/191 (83.25%), Query Frame = 3
Query:   75 MKHNNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            MKHNNVIPNGHFKKHWQNYVKTWFN P                IFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG+S+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK  +ELVK+T +MKS  AYDK+R+ER N+RH G
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAG 191          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 6.036e-82
Identity = 147/191 (76.96%), Postives = 159/191 (83.25%), Query Frame = 3
Query:   75 MKHNNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            MKHNNVIPNGHFKKHWQNYVKTWFN P                IFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELK+AGIPKKLAPTIG++VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK   ELVK+T +MKS KA+DK+R+ER N+RH G
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRHAG 191          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.030e-81
Identity = 146/191 (76.44%), Postives = 160/191 (83.77%), Query Frame = 3
Query:   75 MKHNNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            MKHNNVIP+ HF+KHWQNYVKTWFN P                IFPRPT+GPLRPVVHGQTLKYNMK+RAG+GFTLEELK AGIPKKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQVQG YMPIA  K  +ELVK+T D+K+FKAYDK+R+ER N RH G
Sbjct:    1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAG 191          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.219e-74
Identity = 137/191 (71.73%), Postives = 152/191 (79.58%), Query Frame = 3
Query:   75 MKHNNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            MKHNNVIPNGHFKK W+NYVKT FN P                IFPRPTAGP+RPVVH QTL YNMK+RAG+GFTLEELKAAGIPKKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA ATQVQ  +MPI  E PT+ELVK+T DMK F AYDK+R+E +N+RH G
Sbjct:    1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAG 191          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.817e-63
Identity = 120/183 (65.57%), Postives = 136/183 (74.32%), Query Frame = 3
Query:   99 NGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            NGHFKKHWQNYVKTWFN P                I PRPTAG LRP+VHGQTLKYNMK+R+GRGF+LEELKAAGIPKKLAPTIG++VDHRR+NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P    TATQV G YMPI  EK  + L KV + MKSF AY KLR+ER NERH G
Sbjct:    5 NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNERHIG 187          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.703e-56
Identity = 105/188 (55.85%), Postives = 132/188 (70.21%), Query Frame = 3
Query:   75 MKHNNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNER 638
            ++ N+++PNGHF K WQ +VKTWFN P                 FPRP AG L+P+V  QT+KYN K R GRGFTLEELK AGIP K APT+G++VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A+Q +G  +P+   KP +ELVK+T DMK    Y KLRIERVN R
Sbjct:    2 VRGNDMLPNGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKLRIERVNAR 189          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 2.094e-50
Identity = 102/188 (54.26%), Postives = 125/188 (66.49%), Query Frame = 3
Query:   84 NNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            N +I N HF K WQ  V+TWFN P                I PRP +GPLRPVV   T++Y+ K+RAGRGFTLEELKAAGI KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  ATQ+ GP MPI       +   +++D K+FKA+  LR+ R N R FG
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFG 193          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.023e-49
Identity = 99/191 (51.83%), Postives = 127/191 (66.49%), Query Frame = 3
Query:   78 KHNNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKP-TVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            K NN+IPN H+ K WQ +VKTWFN P                +FPRP +G LRPVV   T++Y+ KLRAGRGFTLEELK AGI    A TIG++VD RRKN+SLE  Q N+QRLK Y++KL++FP   +K +AG+S+ EE   ATQ++GP +PI  E+P  VE  +VT+D K FKA+  LR  R + R  G
Sbjct:    3 KGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVG 193          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 4.827e-47
Identity = 96/188 (51.06%), Postives = 120/188 (63.83%), Query Frame = 3
Query:   84 NNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            N +I N HF K WQ  V+TWFN P                I PRP AGPLRP+V   T++YN K+RAGRGFTLEELKAAGI K++A TIG++VD RR+NRS E L  NVQRLK Y++KL++FPR+    K GDS  EE+  ATQ+ GP MPI       +   +T++ K F A+  LR+ R N R FG
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLFG 193          
The following BLAST results are available for this feature:
BLAST of DN135180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL131_ARATH2.216e-8477.4960S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL132_BRANA1.588e-8277.4960S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_BRANA6.036e-8276.9660S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL133_ARATH1.030e-8176.4460S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_ARATH1.219e-7471.73Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC2.817e-6365.5760S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_CHLSW9.703e-5655.8560S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_DANRE2.094e-5054.2660S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_DROME3.023e-4951.8360S ribosomal protein L13 OS=Drosophila melanogast... [more]
RL13_ICTPU4.827e-4751.0660S ribosomal protein L13 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionwca07d10 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07d10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135180 ID=DN135180; Name=DN135180; organism=Citrus sinensis; type=EST; length=647bp
GGGGGGTTGGCTCTGTNNNNGTCGAGACTGAGAGAAACGGACATAGTCGT
CTGCATTTCGCTCTGTAAACAGAAATGAAGCATAACAACGTAATTCCAAA
TGGGCACTTTAAGAAGCATTGGCAGAACTATGTCAAGACTTGGTTCAACC
TACCTGCTCGCAAAAATCGACGACGAGTCGCTCGTCAAAAGAAGGCCGTT
AAAATCTTCCCTCGCCCTACTGCTGGGCCGCTTCGTCCCGTCGTTCATGG
CCAGACTTTGAAATACAACATGAAATTAAGGGCTGGCAGAGGCTTTACTC
TTGAGGAACTCAAGGCTGCTGGAATTCCCAAGAAACTGGCTCCGACAATT
GGTGTTTCAGTCGATCATCGACGCAAGAACCGTTCTCTTGAGGGTCTTCA
ATCTAATGTTCAGAGGCTCAAGACTTACAAGGCTAAGTTGGTTGTTTTCC
CAAGACGTGCTCGCAAGTTCAAGGCTGGTGATTCTGCCCCTGAGGAATTG
GCAACAGCAACTCAAGTACAAGGACCTTACATGCCCATTGCTCCTGAGAA
GCCTACTGTCGAGCTTGTTAAGGTTACTCAAGATATGAAGTCCTTCAAGG
CTTATGACAAACTCCGTATCGAGCGTGTGAACGAGCGCCATTTTGGT
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