DN135164

Overview
NameDN135164
Unique NameDN135164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5695 contig Csv1_Contig5695:1..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135164 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.029e-40
Identity = 101/193 (52.33%), Postives = 127/193 (65.80%), Query Frame = 2
Query:   89 MAASLATQSMLGSSVVAARVTGTRKSGVYQFSSVK--YLPGTLQRNVSLSVRCMAKNEQQKDQ-----------STQPP-----KLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVT 613
            MA S + QS++ +S+       + +S V QF+++   Y+P TL+RNVSL VR MA+ E ++             ST  P     + P++STKFSD+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ +  QLS GGVAWFLGT          P F+GVSVESKS   M+SDAE WNGR AM+GLVALA T
Sbjct:    1 MAVS-SCQSIMSNSMTNI----SSRSRVNQFTNIPSVYIP-TLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFT 187          
BLAST of DN135164 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.332e-31
Identity = 73/148 (49.32%), Postives = 99/148 (66.89%), Query Frame = 2
Query:  209 LQRNVSLSVRCMAKN------EQQKDQSTQP------PKLPRISTKFS-DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVT 613
            ++RN   +VR M ++      +QQK Q T        P    ++TK + D+F+F G APERINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL T          P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALA T
Sbjct:   41 MRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFT 188          
BLAST of DN135164 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.180e-28
Identity = 76/176 (43.18%), Postives = 97/176 (55.11%), Query Frame = 2
Query:   89 MAASLATQSMLGSSVVAARVTGTRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVT 613
            MA  ++  S  G++VV        +S    F + + LP       +L  R +    Q +  S  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++AELWNGRFAM+GLVALA T
Sbjct:    1 MATMMSMSSFAGAAVVP-------RSSASSFGA-RSLP-------ALGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAAT 161          
BLAST of DN135164 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.180e-28
Identity = 69/147 (46.94%), Postives = 87/147 (59.18%), Query Frame = 2
Query:  179 FSSVKYLP-GTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVT 613
            F+    LP G+ +   +L  R +    Q +  +  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++AELWNGRFAM+GLVALA T
Sbjct:   10 FAGAAVLPRGSARSLPALGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAAT 156          
BLAST of DN135164 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.104e-26
Identity = 66/120 (55.00%), Postives = 79/120 (65.83%), Query Frame = 2
Query:  275 TQPPKLPRISTKFS-----DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS--DGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVT 613
            T  P  P+  TK +     D  AFSGPAPERINGRLAM+GFVAAL+VE ++G  +  Q+     G+AWFL T          PL +G SVESKS G  ++DAELWNGRFAM+GLVALA T
Sbjct:  101 TTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAAT 220          
BLAST of DN135164 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.073e-13
Identity = 58/153 (37.91%), Postives = 71/153 (46.41%), Query Frame = 2
Query:  182 SSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPR--------ISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSD--GFMTSDAELWNGRFAMMGLVALAV 610
            +S+   P  L R  +    C      + + ST PP  P          +   ++V  FSG APE INGRLAM+GFVAAL  ELS G+ V  QL D      L T          P F       K D  G  T DAE+ NGRFAM+G  A+ V
Sbjct:   16 ASINVRPAPLLRTAAPKRVCKHIVRAENNPSTPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLV 162          
The following BLAST results are available for this feature:
BLAST of DN135164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.029e-4052.33Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL4.332e-3149.32Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI9_HORVU1.180e-2843.18Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU1.180e-2846.94Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU1.104e-2655.00High molecular mass early light-inducible protein ... [more]
CBR_DUNBA4.073e-1337.91Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionwca07b08 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07b08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135164 ID=DN135164; Name=DN135164; organism=Citrus sinensis; type=EST; length=613bp
GGGGGATCATCAAAATTGCAAGTAAGGAGCCCATTAACCTAAAAACTCCC
AGTTGCTAAATTATTCCTCCGTTGCATAATCTACAAAAATGGCTGCTTCA
CTCGCCACTCAATCTATGCTTGGAAGCTCTGTCGTCGCAGCTCGTGTTAC
CGGCACCAGGAAATCTGGGGTGTACCAATTTTCCTCTGTTAAGTACTTAC
CTGGTACTCTGCAGAGAAATGTTAGCTTATCAGTGCGCTGCATGGCTAAA
AATGAGCAGCAAAAGGATCAATCAACTCAGCCACCAAAGCTACCGCGTAT
AAGCACGAAGTTCTCTGACGTGTTTGCGTTCAGCGGGCCGGCACCGGAGA
GGATAAACGGGAGGCTCGCGATGATTGGGTTCGTGGCTGCATTGGCGGTG
GAGCTATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCAGACGGTGGAGT
TGCCTGGTTCTTGGGGACCAGTGTTCTGCTTTCGGTTGCGTCCCTGGTTC
CTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATGGGTTCATGACT
TCGGATGCTGAGTTGTGGAATGGGAGGTTCGCTATGATGGGTCTTGTTGC
TTTGGCTGTCACT
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