DN135142

Overview
NameDN135142
Unique NameDN135142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.083e-17
Identity = 37/41 (90.24%), Postives = 41/41 (100.00%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 213
            TTVFSHSQTVVVCGNCQ++LCQPTGG+A+LTEGCSFRRKGD
Sbjct:   46 TTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.896e-16
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 213
            TTVFSHSQTVVVC  CQ+VLCQPTGG+ARLTEGCSFRRKGD
Sbjct:   46 TTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRKGD 86          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.822e-15
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 207
            TTVFSHSQTVVVCGNCQ+VLCQPTGG+ARL EGCSFR+K
Sbjct:   46 TTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS27_SCHPO (40S ribosomal protein S27 OS=Schizosaccharomyces pombe GN=rps27 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.225e-14
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 207
            TTVFSH+QTVV+CG+C SVLCQPTGG+ARL EGCSFRRK
Sbjct:   44 TTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.225e-14
Identity = 32/39 (82.05%), Postives = 38/39 (97.44%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 207
            TTVFSHSQTVV+CGNCQ++LC PTGG+A+LTEGCSFR+K
Sbjct:   46 TTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS27_NEUCR (40S ribosomal protein S27 OS=Neurospora crassa GN=rps-27 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.097e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 207
            TTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   44 TTVFSHAQTVVICQGCTTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS27_XENLA (40S ribosomal protein S27 OS=Xenopus laevis GN=rps27 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 207
            TTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   44 TTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS27_RAT (40S ribosomal protein S27 OS=Rattus norvegicus GN=Rps27 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 207
            TTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   44 TTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS27_PONAB (40S ribosomal protein S27 OS=Pongo abelii GN=RPS27 PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 207
            TTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   44 TTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS27_MOUSE (40S ribosomal protein S27 OS=Mus musculus GN=Rps27 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 207
            TTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   44 TTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
The following BLAST results are available for this feature:
BLAST of DN135142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS272_ARATH4.083e-1790.2440S ribosomal protein S27-2 OS=Arabidopsis thalian... [more]
RS27_HORVU5.896e-1690.2440S ribosomal protein S27 OS=Hordeum vulgare GN=RP... [more]
RS273_ARATH3.822e-1589.7440S ribosomal protein S27-3 OS=Arabidopsis thalian... [more]
RS27_SCHPO4.225e-1484.6240S ribosomal protein S27 OS=Schizosaccharomyces p... [more]
RS271_ARATH4.225e-1482.0540S ribosomal protein S27-1 OS=Arabidopsis thalian... [more]
RS27_NEUCR2.097e-1382.0540S ribosomal protein S27 OS=Neurospora crassa GN=... [more]
RS27_XENLA3.577e-1382.0540S ribosomal protein S27 OS=Xenopus laevis GN=rps... [more]
RS27_RAT3.577e-1382.0540S ribosomal protein S27 OS=Rattus norvegicus GN=... [more]
RS27_PONAB3.577e-1382.0540S ribosomal protein S27 OS=Pongo abelii GN=RPS27... [more]
RS27_MOUSE3.577e-1382.0540S ribosomal protein S27 OS=Mus musculus GN=Rps27... [more]

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Properties
Property NameValue
Genbank descriptionwca06h04 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06h04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135142 ID=DN135142; Name=DN135142; organism=Citrus sinensis; type=EST; length=391bp
GGGTAAGTTTNTTGANNNNTTATTTATATTTTCATTTAAATTTATAAATA
GATATTGATTTTCCTATTTGGTTTGTCTGTAAATTTCAAAACAACTGTTT
TCAGCCACTCTCAAACTGTGGTGGTTTGTGGCAACTGCCAGTCCGTTCTA
TGCCAGCCCACTGGTGGACGTGCCAGACTCACTGAGGGATGTTCTTTCCG
GAGAAAGGGTGACTAAGTGCTACTAAATGATGGAAGAATTTTGTCACATC
CTTTCTTTTTTCCCCCTTTTTCCTCTTTTGTTATGATGTATTAATTTTGA
TATAACTTATGGTGTGGTTGATCTTATGTTTGAAAGATTATATTTCTAAG
TGAATTTTTTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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