DN135123

Overview
NameDN135123
Unique NameDN135123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5271 contig Csv1_Contig5271:189..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135123 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.637e-38
Identity = 80/97 (82.47%), Postives = 80/97 (82.47%), Query Frame = 2
Query:  215 MARXXXXXXXXXXPVADGISLSIGRRGYXXXXP*GTISRTGIMEKNDLTPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 505
            MAR          PVADGISLSI RRGY    P GTISRTGIMEKNDL PAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of DN135123 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-17
Identity = 50/104 (48.08%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  215 MARXXXXXXXXXXPVADGISLSIGRRGYXXXXP*G---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 502
            MAR           + DG+ +SI RRGY    P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of DN135123 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16
Identity = 48/104 (46.15%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  215 MARXXXXXXXXXXPVADGISLSIGRRGYXXXXP*G---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 502
            MAR           V D + +SI RRGY    P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of DN135123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI5.637e-3882.47Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI3.216e-1748.08Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI7.921e-1646.15Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionwca06e11 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06e11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135123 ID=DN135123; Name=DN135123; organism=Citrus sinensis; type=EST; length=668bp
GGGGGCCTCTTCACAGTTTCTCCTCTCTCTTTATAAAATAACAGAAAACC
CTAAAGCCTTCTTCCTCACAAGCACAGCACAAAGAGAGCGAGCCGCTAGC
TTTTGCCTATAGCTACTGCAGGAGCAGAATCTTTCTTCTTCTGTAGTAGC
ACTGTACAGAAACATCCCAGCTAGCTATCTTCATATCTATTAAGTTCTAT
AAGTAAATAAAACAATGGCCCGCTCTCTCTCCAAAGCTAAGCTTCTTCTT
GCTCCTGTTGCTGATGGCATCTCGCTCTCCATTGGCAGGAGAGGATATGC
TGCAGCAGCACCCTAGGGAACCATATCTCGGACTGGCATCATGGAGAAAA
ATGATTTGACGCCTGCGGTGAGAGAGGATTCTGGGGCCTCTTCTGCCTGG
GCCCCAGATCCCATCACTGGGTACTACAGGCCGGAGAATCGGGCGGTCGA
GATTGATCCAGCAGAGCTTCGAGAGATGCTGTTGAACCACAAAGTCAGGG
CACACTAGGGAGTGGTCGCGCATAGCAGCAGATCCTTTGCTGTTAGCGGT
GCTTTAACTTTTAAGTGATGTTGTTACAGTAGCAATTTTGACTCACTCTA
AAGTCTTTGCTGTTGTTTTGATATCAACTGTTATTTACAACCCAAAAAAA
AAAAAAAAAAAAAAAAAA
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