DN135109

Overview
NameDN135109
Unique NameDN135109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12982 contig Csv1_Contig12982:1..477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_ARATH (40S ribosomal protein S29 OS=Arabidopsis thaliana GN=RPS29A PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 9.337e-26
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            MGHSNVWNSHP+ YGPGSR CRVCGN H +IRKYGL CCRQCFRSNAKEIGF+KYR
Sbjct:    1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_WHEAT (40S ribosomal protein S29 OS=Triticum aestivum GN=RPS29 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.052e-25
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            MGHSNVWNSHP+ YG GSR CRVCGN H +IRKYGLMCCRQCFRS+AK+IGF+KYR
Sbjct:    1 MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIKYR 56          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_GRIJA (40S ribosomal protein S29 OS=Griffithsia japonica GN=RPS29 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.306e-19
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            MGH N+W SHPR YG GSR+C++CGN H +IRKY +  CRQCFR  AK+IGF+KYR
Sbjct:    1 MGHQNIWYSHPRKYGKGSRSCKICGNKHGLIRKYSMNICRQCFREYAKDIGFIKYR 56          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_IXOSC (40S ribosomal protein S29 OS=Ixodes scapularis GN=RpS29 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.222e-17
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH N+W SHPR YGPGSR CRVC N H +IRKYGL  CR+CFR  A +IGF K
Sbjct:    1 MGHENIWYSHPRKYGPGSRYCRVCANHHGLIRKYGLNICRRCFRQYAADIGFKK 54          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_GUITH (40S ribosomal protein S29A OS=Guillardia theta GN=rps29A PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.596e-17
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            M H N+WN H RTYG GSR CR+CGN   +IRKYGL  CRQCFR  ++ +GF KYR
Sbjct:    1 MSHKNIWNKHSRTYGKGSRGCRICGNRSGLIRKYGLSICRQCFREKSQNLGFDKYR 56          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_PLUXY (40S ribosomal protein S29 OS=Plutella xylostella GN=RpS29 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.723e-17
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH+N+W SHPR YG GSR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGHANIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_SPOFR (40S ribosomal protein S29 OS=Spodoptera frugiperda GN=RpS29 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.556e-17
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH+N+W SHPR YG GSR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_SCALT (40S ribosomal protein S29 OS=Scarabaeus laticollis GN=RpS29 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.556e-17
Identity = 36/54 (66.67%), Postives = 40/54 (74.07%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH N+W SHPR YG GSR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGHQNIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_BOMMO (40S ribosomal protein S29 OS=Bombyx mori GN=RpS29 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.066e-17
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH+N+W SHPR YG GSR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_ASHGO (40S ribosomal protein S29 OS=Ashbya gossypii GN=RPS29 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.035e-16
Identity = 37/56 (66.07%), Postives = 40/56 (71.43%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            M H NVW SHPR YG GSR CRVC +   +IRKYGL  CRQCFR  A +IGF KYR
Sbjct:    1 MAHENVWFSHPRNYGKGSRQCRVCASHSGLIRKYGLNICRQCFREKANDIGFHKYR 56          
The following BLAST results are available for this feature:
BLAST of DN135109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS29_ARATH9.337e-2685.7140S ribosomal protein S29 OS=Arabidopsis thaliana ... [more]
RS29_WHEAT6.052e-2582.1440S ribosomal protein S29 OS=Triticum aestivum GN=... [more]
RS29_GRIJA1.306e-1966.0740S ribosomal protein S29 OS=Griffithsia japonica ... [more]
RS29_IXOSC1.222e-1768.5240S ribosomal protein S29 OS=Ixodes scapularis GN=... [more]
RS29_GUITH1.596e-1762.5040S ribosomal protein S29A OS=Guillardia theta GN=... [more]
RS29_PLUXY2.723e-1766.6740S ribosomal protein S29 OS=Plutella xylostella G... [more]
RS29_SPOFR3.556e-1766.6740S ribosomal protein S29 OS=Spodoptera frugiperda... [more]
RS29_SCALT3.556e-1766.6740S ribosomal protein S29 OS=Scarabaeus laticollis... [more]
RS29_BOMMO6.066e-1766.6740S ribosomal protein S29 OS=Bombyx mori GN=RpS29 ... [more]
RS29_ASHGO1.035e-1666.0740S ribosomal protein S29 OS=Ashbya gossypii GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionwca06d03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06d03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135109 ID=DN135109; Name=DN135109; organism=Citrus sinensis; type=EST; length=486bp
GCCGGGGCCTCAGCAGATTCTATGGGTTTNNNNCAAGCTTAAGCGAACCG
GNNNTTCTCTTTGTCAAGGAAGGAGAAAACAATCAATCATGGGTCACTCC
AACGTTTGGAACTCTCACCCCAGGACTTACGGCCCCGGTTCTCGCGCTTG
CCGGGTTTGTGGGAATCCTCATGCAATAATCAGGAAGTATGGGCTCATGT
GCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAGATTGGTTTTGTTAAG
TACCGCTAAATGATTAACATGTTGTCAACATCAGAAGGGGGGTTACCAGT
ACCATGCTGATTTTGTTTATCTGTGATACCTGTAGCGAATTTCTGTTTCT
CAAGGATTGTTAAGCGATGTTTTGTCTTAAATTGATTCAATGTTTGACAA
AGCAATTGTTGGACTAAGAATATCATTGATCATTCTTATTAAGGTTTAAT
CATTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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