DN135088

Overview
NameDN135088
Unique NameDN135088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7741 contig Csv1_Contig7741:35..567. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN135088 vs. ExPASy Swiss-Prot
Match: USF_AQUPY (Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.749e-12
Identity = 46/143 (32.17%), Postives = 74/143 (51.75%), Query Frame = 3 
Query:  117 IQIQRDDTTFDAYVVG-KEDAPGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALIPDLYRGKVGLDTAEAQHLMSG-----LDWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFFGVP 512
            ++ +++      Y+   K   PG++V+ EWWG++  + N      +    GF A  PD Y GK   +  +A  LM+      +D   A+    ASV++LK       KKVGVTG+C GG L++  +   P+ +DA V F+G+P
Sbjct:    5 VEFEKNGVKVRGYIATPKWGGPGVIVIHEWWGLESPLSNIKEICDRFAQEGFVAFAPDFYEGKYADNPDDAGKLMTDMFENRMDKVDAI--FKASVDFLKECRYTSPKKVGVTGFCCGGTLSMYFAGKFPDLIDASVPFYGLP 145
The following BLAST results are available for this feature:
BLAST of DN135088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
USF_AQUPY5.749e-1232.17Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1[more]
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Properties
Property NameValue
Genbank descriptionwca06a07 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06a07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135088 ID=DN135088; Name=DN135088; organism=Citrus sinensis; type=EST; length=533bp
GGGGGAGCAGATCAACTCCGCTTCTTAAGCCATCTCTCGCAAGGACTCAC
TTTCCTGCCGGTTATCGCTTTGCAGTCAGATCAATGGCAGACTCTGCAGC
TTCTCCCTTCAAGAAAATCCAGATTCAGAGAGATGATACTACTTTTGATG
CATATGTGGTTGGCAAAGAAGACGCCCCTGGGATTGTTGTAGTTCAGGAG
TGGTGGGGTGTTGATTTTGAGATCAAGAACCATGCTGTCAAAATCTCCCA
ACTAAATCCTGGATTCAAGGCACTTATACCAGATTTATATCGGGGAAAGG
TTGGTTTGGATACTGCTGAAGCACAGCACTTGATGAGTGGTCTTGATTGG
CCTGGTGCTGTCAAGGATATCCACGCTTCAGTTAATTGGCTTAAGGCAAA
TGGTTCCAAGAAGGTTGGCGTGACTGGATATTGCATGGGAGGTGCTCTCG
CTATTGCAAGTTCTGTCTTAGTTCCTGAGGTTGATGCTGTTGTTTCATTT
TTTGGGGTTCCCCCACCTGAGCTCGCCGATCCT
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