DN135077

Overview
NameDN135077
Unique NameDN135077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.862e-27
Identity = 49/74 (66.22%), Postives = 65/74 (87.84%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+RE+++ PGYYDGRYWTMWKLPMFGCNDSSQ+L E++ECKKAYP+A+IR + F+N++Q Q +SF+  KP
Sbjct:  106 EHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECKK YPNA+IR + F+N +Q QC+SF+  KP
Sbjct:    3 EHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKP 76          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+  KP
Sbjct:   97 EHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+  KP
Sbjct:   97 EHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+  KP
Sbjct:  102 EHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 175          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+  KP
Sbjct:   97 EHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+  KP
Sbjct:  102 EHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 175          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+QECKK+YP A+IR + F+N +Q QC+SF+  KP
Sbjct:  105 EHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+  KP
Sbjct:   97 EHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.124e-26
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN+  PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+  KP
Sbjct:   97 EHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKP 170          
The following BLAST results are available for this feature:
BLAST of DN135077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS_BETVE3.862e-2766.22Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SINAL6.588e-2764.86Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS7_FLAPR6.588e-2764.86Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS5_FLAPR6.588e-2764.86Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_FLAPR6.588e-2764.86Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_FLAPR6.588e-2764.86Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FLAPR6.588e-2764.86Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_SOLTU6.588e-2766.22Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_FLAPR6.588e-2764.86Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_FLATR1.124e-2664.86Ribulose bisphosphate carboxylase small chain, chl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca05h02 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05h02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135077 ID=DN135077; Name=DN135077; organism=Citrus sinensis; type=EST; length=490bp
GGGATCCCTTGCCTTGAATTGATGAGGTGGGATATGTGCACAGGGAGAAT
AGCAAAATGCCAGGGTATTATGATGGGAGGTATTGGACAATGTGGAAGTT
GCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATGAAATACAAG
AGTGCAAAAAAGCATACCCAAATGCTTATATTCGCTGCTTGGCATTTAAC
AATCAGAAACAGGGCCAGTGCATGTCCTTTCTCATCCAGAAACCAACCAC
CACCACTAGCACCTAAAAGCACTTCTCTCACTTTGTTTGGTTGAATTCTA
TAATGCAGCTTGTTTGATTATGGAGATGCTTTTCGTTTTAAATAATAAAG
ACTTGATCATAATCTGTGTGACATCATGTGATTAGCACACAGTTTAAAGG
TTCTTCTTTCGGCGCAGCTGGTTGGAAACACCAGACGTTTTATTATAACT
TTTCTTGTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top