DN135051

Overview
NameDN135051
Unique NameDN135051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5689 contig Csv1_Contig5689:1..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135051 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.130e-29
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  407 EVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECXCYRDLKNSKGKPKCP 610
            + +MAGS FCDSKC +RCSKAG  DRCLKYCGICC++C CVPSGTYG+K EC CYRD KNSKGK KCP
Sbjct:   21 QTTMAGSSFCDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of DN135051 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.280e-14
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 2
Query:  434 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECXCYRDLKNSKGKPKCP 610
            C  KC  RCSK   +  C+ +C  CC KC CVP+GTYG+K  C CY + K  +G PKCP
Sbjct:   54 CQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of DN135051 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 27/59 (45.76%), Postives = 34/59 (57.63%), Query Frame = 2
Query:  434 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECXCYRDLKNSKGKPKCP 610
            C  +C  RCS    +  C+ +C  CC  C CVP G YG+K  C CY + K  +GKPKCP
Sbjct:   38 CKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of DN135051 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 28/59 (47.46%), Postives = 34/59 (57.63%), Query Frame = 2
Query:  434 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECXCYRDLKNSKGKPKCP 610
            C S+C  RC K      C+ +C  CC KC CVP G YG+K  C CY + K  +G PKCP
Sbjct:   48 CPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
BLAST of DN135051 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = 2
Query:  434 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECXCYRDLKNSKGKPKCP 610
            C S C  RC  + R   C + CG CC +C+CVP GTYG+ D+C CY  L    G+ KCP
Sbjct:   40 CGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of DN135051 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 2
Query:  434 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECXCYRDLKNSKGKPKCP 610
            C  +C  RCSK+ R   CL+ C  CC +C+CVP GT G+   C CY  +    G+ KCP
Sbjct:   41 CGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of DN135051 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 2
Query:  434 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECXCYRDLKNSKGKPKCP 610
            C  +C  RCSK+ R + CL+ C  CC +C+CVP GT G+   C CY  +    G+ KCP
Sbjct:   41 CGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of DN135051 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 26/59 (44.07%), Postives = 32/59 (54.24%), Query Frame = 2
Query:  434 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECXCYRDLKNSKGKPKCP 610
            C   CA RC  + R   C + CG CC +C+CVP GT G+ + C CY  L     K KCP
Sbjct:   46 CGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
The following BLAST results are available for this feature:
BLAST of DN135051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SNAK1_SOLTU9.130e-2976.47Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GAST1_SOLLC1.280e-1450.85Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC5.377e-1345.76Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GASA4_ARATH1.565e-1247.46Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
GASA1_ARATH2.043e-1247.46Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA2_ARATH2.259e-1144.07Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH2.951e-1144.07Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
SNAK2_SOLTU8.585e-1144.07Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionwca05d12 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05d12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135051 ID=DN135051; Name=DN135051; organism=Citrus sinensis; type=EST; length=616bp
GGGGATTGGGCATAATNNNGAGTGTTTGTGATGAAATTATCTTATATGGC
TAAGCTTGGCCTTTTGAGTTACTCCAAAGCCTTTATAAGCCACGCCGGTC
CAGAAAATTCCTCCACCAATACCAATACCACTTGACAGTCTGTAATCCGC
TGTTTGGGATTTTAATTTGAAGTTGCTTGTAAGCACCTTCCAAACACTTC
ACCTACTCCCTTTTCCTCCACCATATATAGCCCCTGCGTATGCCCTATTT
GCTTTAACAACGATCCATAAGCAAAGCATTACCGATTCTTTGGCTCTCTT
TTTTATTAGCAAATTAACTACTCTTCTTCAGGAAATTCTGAGAAAAATGA
AGCTGGCCTTAGTTACGTTCCTTCTCGTTTCGCTTGTCCTCACCTCCACT
TTCTTTGAGGTCTCAATGGCTGGTTCAGATTTCTGCGACTCAAAGTGTGC
GGTGAGGTGCTCAAAAGCAGGAAGGGAAGACAGGTGCCTGAAGTACTGTG
GAATTTGCTGTGACAAGTGCCATTGTGTTCCATCTGGGACTTACGGGCAC
AAGGACGAGTGCNNNTGCTACAGGGACCTCAAGAACTCCAAGGGCAAACC
TAAGTGTCCTTAAAAT
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