DN134957

Overview
NameDN134957
Unique NameDN134957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5436 contig Csv1_Contig5436:302..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134957 vs. ExPASy Swiss-Prot
Match: DLDH_SYNY3 (Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=lpdA PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 1.398e-25
Identity = 56/100 (56.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:    5 EPXAREKAEKEGFEXXVVKTSFKANTKALSENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHARPTLSEVLDEPFKAA 304
            E  A+E  EKEGF     KT FK N+KAL+E E +G+AK++YR D GE+LG HI G+HA+DLI EA+ AIA    ++++ F VHA PTLSEVLDE +K A
Sbjct:  374 EAQAKELGEKEGFVVSTAKTYFKGNSKALAEKETDGIAKVVYRQDTGELLGAHIIGIHASDLIQEAAQAIADRKSVRELAFHVHAHPTLSEVLDEAYKRA 473          
BLAST of DN134957 vs. ExPASy Swiss-Prot
Match: DLDH1_BACSU (Dihydrolipoyl dehydrogenase OS=Bacillus subtilis GN=pdhD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.956e-13
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 2
Query:   23 KAEKEGFEXXVVKTSFKANTKALSENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHARPTLSEVLDEPFKAA 304
            +A++EG +    K  F AN +ALS NE +G  KLI R ++G ++G  I G  A+D+I E S AI  G   +DI   +HA PTL E+  E  + A
Sbjct:  368 QAKEEGLDIVAAKFPFAANGRALSLNETDGFMKLITRKEDGLVIGAQIAGASASDMISELSLAIEGGMTAEDIAMTIHAHPTLGEITMEAAEVA 461          
BLAST of DN134957 vs. ExPASy Swiss-Prot
Match: DLDH1_BACST (Dihydrolipoyl dehydrogenase OS=Bacillus stearothermophilus GN=pdhD PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.315e-12
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 2
Query:   20 EKAEKEGFEXXVVKTSFKANTKALSENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHARPTLSEVLDEPFKAA 304
            ++A+ EG +    K  F AN +AL+ N+ +G  KL+ R ++G I+G  I G +A+D+I E   AI  G   +DI   +HA PTL E+  E  + A
Sbjct:  366 QQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAEVA 460          
BLAST of DN134957 vs. ExPASy Swiss-Prot
Match: DLDH_PEA (Dihydrolipoyl dehydrogenase, mitochondrial OS=Pisum sativum GN=LPD PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.500e-11
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 2
Query:   20 EKAEKEGFEXXVVKTSFKANTKALSENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHARPTLSEVLDE 289
            E+ ++ G E  V K  F AN++A + +  EGL K+I   +  +ILGVHI   +A +LIHEA+ A+      +DI    HA PT+SE + E
Sbjct:  400 EQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKE 489          
BLAST of DN134957 vs. ExPASy Swiss-Prot
Match: DLDH2_HALMA (Dihydrolipoyl dehydrogenase 2 OS=Haloarcula marismortui GN=lpdA2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.500e-11
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 2
Query:   23 KAEKEGFEXXVVKTSFKANTKALSENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHARPTLSEVLDEPFKAAK 307
            +AE  GFE  + +   +AN +AL+ NE EG  +++   D   +LG  I G  A++LI E    I +G R++DI   +H  PTLSE + E   AA+
Sbjct:  371 EAEAAGFEPVIGQMPVRANGRALTVNEKEGFVRVVADADEEFLLGAQIVGPEASELIAELGLGIEMGARLEDIAGTIHTHPTLSEAVHEAAAAAR 465          
BLAST of DN134957 vs. ExPASy Swiss-Prot
Match: DLDH1_ARATH (Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=LPD1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.500e-11
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 2
Query:   20 EKAEKEGFEXXVVKTSFKANTKALSENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHARPTLSEVLDE 289
            E+ +KEG    V K  F AN++A + +  EGL K++   +  +ILGVHI   +A +LIHEA  AI      +DI    HA PT+SE L E
Sbjct:  406 EQLKKEGVSYRVGKFPFMANSRAKAIDNAEGLVKILADKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKE 495          
BLAST of DN134957 vs. ExPASy Swiss-Prot
Match: DLDH_PIG (Dihydrolipoyl dehydrogenase, mitochondrial OS=Sus scrofa GN=DLD PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.701e-11
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 2
Query:   14 AREKAEKEGFEXXVVKTSFKANTKALSENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHARPTLSEVLDEPFKAA 304
            + E+ ++EG E  V K  F AN++A +  + +G+ K++ +     +LG HI G  A ++I+EA+ A+  G   +DI    HA PTLSE   E   AA
Sbjct:  405 SEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHIIGPGAGEMINEAALALEYGASCEDIARVCHAHPTLSEAFREANLAA 501          
BLAST of DN134957 vs. ExPASy Swiss-Prot
Match: DLDH2_ARATH (Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=LPD2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.701e-11
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 2
Query:   20 EKAEKEGFEXXVVKTSFKANTKALSENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHARPTLSEVLDE 289
            E+ +KEG    V K  F AN++A + +  EG+ K++   +  +ILGVHI   +A +LIHEA  AI      +DI    HA PT+SE + E
Sbjct:  406 EQLKKEGVSYNVGKFPFMANSRAKAIDTAEGMVKILADKETDKILGVHIMSPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAIKE 495          
BLAST of DN134957 vs. ExPASy Swiss-Prot
Match: DLDH_MACFA (Dihydrolipoyl dehydrogenase, mitochondrial OS=Macaca fascicularis GN=DLD PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.446e-11
Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 2
Query:   14 AREKAEKEGFEXXVVKTSFKANTKALSENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHARPTLSEVLDEPFKAA 304
            + E+ ++EG E  V K  F AN++A +  + +G+ K++ +     +LG HI G  A ++++EA+ A+  G   +DI    HA PTLSE   E   AA
Sbjct:  405 SEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAA 501          
BLAST of DN134957 vs. ExPASy Swiss-Prot
Match: DLDH_HUMAN (Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens GN=DLD PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.446e-11
Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 2
Query:   14 AREKAEKEGFEXXVVKTSFKANTKALSENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHARPTLSEVLDEPFKAA 304
            + E+ ++EG E  V K  F AN++A +  + +G+ K++ +     +LG HI G  A ++++EA+ A+  G   +DI    HA PTLSE   E   AA
Sbjct:  405 SEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAA 501          
The following BLAST results are available for this feature:
BLAST of DN134957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
DLDH_SYNY31.398e-2556.00Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (... [more]
DLDH1_BACSU7.956e-1341.49Dihydrolipoyl dehydrogenase OS=Bacillus subtilis G... [more]
DLDH1_BACST2.315e-1237.89Dihydrolipoyl dehydrogenase OS=Bacillus stearother... [more]
DLDH_PEA1.500e-1140.00Dihydrolipoyl dehydrogenase, mitochondrial OS=Pisu... [more]
DLDH2_HALMA1.500e-1137.89Dihydrolipoyl dehydrogenase 2 OS=Haloarcula marism... [more]
DLDH1_ARATH1.500e-1142.22Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Ar... [more]
DLDH_PIG5.701e-1136.08Dihydrolipoyl dehydrogenase, mitochondrial OS=Sus ... [more]
DLDH2_ARATH5.701e-1140.00Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Ar... [more]
DLDH_MACFA7.446e-1135.05Dihydrolipoyl dehydrogenase, mitochondrial OS=Maca... [more]
DLDH_HUMAN7.446e-1135.05Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionwca03h08 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03h08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134957 ID=DN134957; Name=DN134957; organism=Citrus sinensis; type=EST; length=511bp
GGGCGAGCCTCNNGCAAGGGAAAAGGCTGAAAAGGAGGGATTTGAANNNN
TTGTAGTGAAGACAAGCTTCAAAGCTAACACCAAGGCCTTATCAGAAAAC
GAAGGGGAGGGACTTGCTAAGTTAATATACAGACCAGACAACGGTGAGAT
TCTTGGAGTTCATATCTTTGGGCTGCATGCTGCAGACCTTATCCATGAAG
CATCTAATGCTATTGCATTAGGCACACGTATTCAGGACATAAAATTTGCG
GTTCATGCACGTCCAACTCTCTCTGAAGTTCTAGACGAACCGTTTAAAGC
AGCAAAGGTTAAAGATCATGCTTCTAATCCAGTAAGTGAACCAGTTGCAG
TCTAAAGCATCTCAACACTTGGGAAATATTAAATTTTGAAGAAATTTGCT
TGTGCTAGGGAGTACCAAGGAATTTTGCATCCTCAAAGAGAACTAATCAA
CACAGTGACCGTCCTATCAAACCAAACCTGGTGAAGAAATTTGCTGATGT
TTATATGACAT
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