DN134943
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RBM8A_RAT (RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm8a PE=2 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.244e-37 Identity = 78/146 (53.42%), Postives = 100/146 (68.49%), Query Frame = 1 Query: 229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663 KK KGRGF E S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW F GP K R G RSRSP Sbjct: 33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP------KGKRRGGRRRSRSP 169
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RBM8A_HUMAN (RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE=1 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.244e-37 Identity = 78/146 (53.42%), Postives = 100/146 (68.49%), Query Frame = 1 Query: 229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663 KK KGRGF E S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW F GP K R G RSRSP Sbjct: 33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP------KGKRRGGRRRSRSP 169
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RBM8A_BOVIN (RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 1.244e-37 Identity = 78/146 (53.42%), Postives = 100/146 (68.49%), Query Frame = 1 Query: 229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663 KK KGRGF E S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW F GP K R G RSRSP Sbjct: 33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP------KGKRRGGRRRSRSP 169
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RBM8A_DANRE (RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.122e-37 Identity = 78/146 (53.42%), Postives = 102/146 (69.86%), Query Frame = 1 Query: 229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663 KK KGRGF E + R +++++ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F E+GEI+NLHLNLDRRTG++KGYAL+EYE ++EAQ A+ +NG EL+ Q ++VDW F GP K+ R G RSRSP Sbjct: 33 KKRKGRGFGSEEGARSRVR---EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQELMGQPISVDWCFVRGPP------KSKRRGGRRRSRSP 169
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RBM8A_XENTR (RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.620e-37 Identity = 80/146 (54.79%), Postives = 107/146 (73.29%), Query Frame = 1 Query: 229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663 KK KGRGF AD +R+ + +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA A+ +NG +L+ Q ++VDW F GP G KR++ R RSRSP Sbjct: 33 KKRKGRGFG--ADEGTRARIRE-DYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPISVDWGFVRGPPKG--KRRSGR----RRSRSP 169
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RBM8A_MOUSE (RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE=1 SV=3) HSP 1 Score: 154.836 bits (390), Expect = 3.620e-37 Identity = 77/146 (52.74%), Postives = 100/146 (68.49%), Query Frame = 1 Query: 229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663 KK KGRGF + S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW F GP K R G RSRSP Sbjct: 33 KKRKGRGFGSKEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP------KGKRRGGRRRSRSP 169
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RB8AB_XENLA (RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-B PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 4.728e-37 Identity = 80/146 (54.79%), Postives = 107/146 (73.29%), Query Frame = 1 Query: 229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663 KK KGRGF AD +R+ + +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA A+ +NG +L+ Q ++VDW F GP G KR++ R RSRSP Sbjct: 33 KKRKGRGFG--ADEGTRTRIRE-DYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGPPKG--KRRSGR----RRSRSP 169
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RB8AA_XENLA (RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-A PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.797e-36 Identity = 80/146 (54.79%), Postives = 106/146 (72.60%), Query Frame = 1 Query: 229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663 KK KGRGF AD +R+ + ++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA A+ +NG +L+ Q ++VDW F GP G KR++ R RSRSP Sbjct: 33 KKRKGRGFG--ADEGTKTRIREV-YDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGPPKG--KRRSGR----RRSRSP 169
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RBM8A_SALSA (RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.065e-36 Identity = 74/146 (50.68%), Postives = 101/146 (69.18%), Query Frame = 1 Query: 229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663 K+ KGRGF E + R +++++ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F E+GEI+NLHLNLDRRTG++KGYAL+EYE ++EAQ A+ +NG +++ Q ++VDW F GP + R G RSRSP Sbjct: 33 KRRKGRGFGSEEGARSRVR---EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQDMMGQPISVDWGFVRGP-----PKSKRRGGGRRRSRSP 170
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RBM8A_DROME (RNA-binding protein 8A OS=Drosophila melanogaster GN=tsu PE=1 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.228e-33 Identity = 67/135 (49.63%), Postives = 88/135 (65.19%), Query Frame = 1 Query: 229 KKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMR 633 K KGRGF ++++ +R + PGPQRS+EGWI+ VT +HEEAQED++Q F +YGEI+N+HLNLDRRTGF KGYAL+EYE ++A A A+NG E++ QT+ VDW F GP K R Sbjct: 31 KHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVKKSEKRRR 165 The following BLAST results are available for this feature:
BLAST of DN134943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >DN134943 ID=DN134943; Name=DN134943; organism=Citrus sinensis; type=EST; length=663bpback to top |