DN134943

Overview
NameDN134943
Unique NameDN134943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13418 contig Csv1_Contig13418:44..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RBM8A_RAT (RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm8a PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.244e-37
Identity = 78/146 (53.42%), Postives = 100/146 (68.49%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663
            KK KGRGF  E  S    R    +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+  +NG +L+ Q ++VDW F  GP       K  R G   RSRSP
Sbjct:   33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP------KGKRRGGRRRSRSP 169          
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RBM8A_HUMAN (RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.244e-37
Identity = 78/146 (53.42%), Postives = 100/146 (68.49%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663
            KK KGRGF  E  S    R    +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+  +NG +L+ Q ++VDW F  GP       K  R G   RSRSP
Sbjct:   33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP------KGKRRGGRRRSRSP 169          
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RBM8A_BOVIN (RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.244e-37
Identity = 78/146 (53.42%), Postives = 100/146 (68.49%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663
            KK KGRGF  E  S    R    +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+  +NG +L+ Q ++VDW F  GP       K  R G   RSRSP
Sbjct:   33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP------KGKRRGGRRRSRSP 169          
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RBM8A_DANRE (RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.122e-37
Identity = 78/146 (53.42%), Postives = 102/146 (69.86%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663
            KK KGRGF  E  +    R    +++++  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F E+GEI+NLHLNLDRRTG++KGYAL+EYE ++EAQ A+  +NG EL+ Q ++VDW F  GP       K+ R G   RSRSP
Sbjct:   33 KKRKGRGFGSEEGARSRVR---EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQELMGQPISVDWCFVRGPP------KSKRRGGRRRSRSP 169          
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RBM8A_XENTR (RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.620e-37
Identity = 80/146 (54.79%), Postives = 107/146 (73.29%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663
            KK KGRGF   AD    +R+ + +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA  A+  +NG +L+ Q ++VDW F  GP  G  KR++ R     RSRSP
Sbjct:   33 KKRKGRGFG--ADEGTRARIRE-DYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPISVDWGFVRGPPKG--KRRSGR----RRSRSP 169          
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RBM8A_MOUSE (RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 3.620e-37
Identity = 77/146 (52.74%), Postives = 100/146 (68.49%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663
            KK KGRGF  +  S    R    +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+  +NG +L+ Q ++VDW F  GP       K  R G   RSRSP
Sbjct:   33 KKRKGRGFGSKEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP------KGKRRGGRRRSRSP 169          
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RB8AB_XENLA (RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-B PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.728e-37
Identity = 80/146 (54.79%), Postives = 107/146 (73.29%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663
            KK KGRGF   AD    +R+ + +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA  A+  +NG +L+ Q ++VDW F  GP  G  KR++ R     RSRSP
Sbjct:   33 KKRKGRGFG--ADEGTRTRIRE-DYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGPPKG--KRRSGR----RRSRSP 169          
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RB8AA_XENLA (RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-A PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.797e-36
Identity = 80/146 (54.79%), Postives = 106/146 (72.60%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663
            KK KGRGF   AD    +R+ +  ++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA  A+  +NG +L+ Q ++VDW F  GP  G  KR++ R     RSRSP
Sbjct:   33 KKRKGRGFG--ADEGTKTRIREV-YDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGPPKG--KRRSGR----RRSRSP 169          
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RBM8A_SALSA (RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.065e-36
Identity = 74/146 (50.68%), Postives = 101/146 (69.18%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRSP 663
            K+ KGRGF  E  +    R    +++++  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F E+GEI+NLHLNLDRRTG++KGYAL+EYE ++EAQ A+  +NG +++ Q ++VDW F  GP      +   R G   RSRSP
Sbjct:   33 KRRKGRGFGSEEGARSRVR---EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQDMMGQPISVDWGFVRGP-----PKSKRRGGGRRRSRSP 170          
BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: RBM8A_DROME (RNA-binding protein 8A OS=Drosophila melanogaster GN=tsu PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.228e-33
Identity = 67/135 (49.63%), Postives = 88/135 (65.19%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMR 633
            K  KGRGF  ++++       +R       +  PGPQRS+EGWI+ VT +HEEAQED++Q  F +YGEI+N+HLNLDRRTGF KGYAL+EYE  ++A  A  A+NG E++ QT+ VDW F  GP       K  R
Sbjct:   31 KHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVKKSEKRRR 165          
The following BLAST results are available for this feature:
BLAST of DN134943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RBM8A_RAT1.244e-3753.42RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm... [more]
RBM8A_HUMAN1.244e-3753.42RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE... [more]
RBM8A_BOVIN1.244e-3753.42RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2... [more]
RBM8A_DANRE2.122e-3753.42RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=... [more]
RBM8A_XENTR3.620e-3754.79RNA-binding protein 8A OS=Xenopus tropicalis GN=rb... [more]
RBM8A_MOUSE3.620e-3752.74RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE... [more]
RB8AB_XENLA4.728e-3754.79RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8... [more]
RB8AA_XENLA1.797e-3654.79RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8... [more]
RBM8A_SALSA3.065e-3650.68RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=... [more]
RBM8A_DROME9.228e-3349.63RNA-binding protein 8A OS=Drosophila melanogaster ... [more]

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Properties
Property NameValue
Genbank descriptionwca03f10 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03f10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134943 ID=DN134943; Name=DN134943; organism=Citrus sinensis; type=EST; length=663bp
GGCCGGGGGTCTTCTCAGAATAAAAATTAAAACGCAAGACGCAGGCAAAT
CTCAAATCCCTAAAAGTTCGAAAAAAACACAACAAAAATGGCGAACGCAG
AAGTGGACGCGCTCGACTTCGAGGACGACGACTTGATGGACGAGGACGGG
ACTGCCGACGTCGATGCATCCTCTTCCCCGCGGGCCCCGCAGCCCAAGCT
TAAGTCCGCCATCACTGGTGGCGCACCTAAGAAGACCAAAGGACGCGGTT
TTCGTGAAGAAGCCGACTCCGAGCGACATAGCCGGCTCGCTGATCGTAAT
TTTGAGTCTCTTGGCACCGATGGGGGACCGGGTCCCCAACGATCTATTGA
GGGATGGATAATTTTGGTTACTGGTGTGCATGAAGAGGCACAAGAAGATG
ATTTACAAAATGTATTTGGTGAATATGGGGAGATCAGAAACTTGCATTTG
AATCTTGATCGTCGTACAGGTTTTGTGAAGGGGTATGCGCTGATTGAATA
TGAGAATTTTGAGGAAGCGCAGAATGCCATAACTGCAATGAATGGAGGTG
AACTTCTTACACAGACCCTGACTGTTGATTGGGCCTTCAGCAATGGGCCT
AGTACTGGACCCTTCAAAAGAAAGAACATGAGGCCTGGACGGACANNNCG
CTCAAGGAGTCCC
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