DN134940

Overview
NameDN134940
Unique NameDN134940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN134940_ssr1 microsatellite DN134940_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
DN134940_ssr143 microsatellite DN134940_ssr143:143..152. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4122 contig Csv1_Contig4122:1..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 1.776e-72
Identity = 131/152 (86.18%), Postives = 136/152 (89.47%), Query Frame = 2
Query:  164 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619
            MVSGSGIC+KRVVVDARHHMLGRLASI AKELLNGQKVV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            YEGVP PYDK+KRMVIPDALKVLRLQ GHKYCLLGRL+SEVGW
Sbjct:    1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW 152          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.151e-71
Identity = 127/152 (83.55%), Postives = 136/152 (89.47%), Query Frame = 2
Query:  164 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619
            MVSGSGICAKRVVVDARHHMLGRLAS+VAK+LLNGQ +V VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EGVP PYDK+KRMV+PDALKVLRLQ GHKYCLLGRL+SEVGW
Sbjct:    1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGW 152          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.565e-71
Identity = 129/152 (84.87%), Postives = 135/152 (88.82%), Query Frame = 2
Query:  164 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619
            MVSGSGIC+KRVVVDARHHM GRLASI+AKELLNGQ VV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EGVP PYDKVKRMVIPDALKVLRLQ GHKYCLLGRL+SEVGW
Sbjct:    1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW 152          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.273e-70
Identity = 127/152 (83.55%), Postives = 134/152 (88.16%), Query Frame = 2
Query:  164 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619
            MVSGSGICAKRVVVD RHHMLGRLAS  AKELLNGQ+VV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EG+P PYDK+KRMVIPDALKVLRLQ GHKYCLLGRL+SEVGW
Sbjct:    1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGW 152          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.032e-68
Identity = 123/152 (80.92%), Postives = 133/152 (87.50%), Query Frame = 2
Query:  164 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619
            MVSGSGICAK VVVDARHHMLGRLASI+AKELL+GQ+VV VRCEEICMSGGLVRQKMKY+RFLRKRMNTKPSHGPIHFRAP++I WRT+RGMIPHKT            +EGVP PYD+ KRMVIPDALKVLRLQ GHKYCLLGRL+ EVGW
Sbjct:    1 MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGW 152          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.244e-66
Identity = 124/152 (81.58%), Postives = 133/152 (87.50%), Query Frame = 2
Query:  164 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619
            MVSGSGI AKRVVVDARHHMLGRLASIVAKELLNGQKVV VR EEIC+SGGLVRQKMKY+RFLRKRMNTKPSHGPIH  AP+KIFWRTVRGMIPHKT            YEG+P P+DK KR+V+PDALKVLRLQKGHKYCLLG+L+SEVGW
Sbjct:    1 MVSGSGIAAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGW 151          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.707e-49
Identity = 93/143 (65.03%), Postives = 111/143 (77.62%), Query Frame = 2
Query:  191 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619
            K VVVD R H+LGRLA+ +AKELLNGQ+VVAVR EEI +SG L R K+K+  FL+KRMNT P  GP HFR+PA+I WRT+RGMIPHKT            +EGVP PYDK+KRMVIP AL+VLRL+ G K+C+LGRLA+EVGW
Sbjct:    4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGW 146          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 2.417e-45
Identity = 86/141 (60.99%), Postives = 106/141 (75.18%), Query Frame = 2
Query:  197 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGW 147          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 2.417e-45
Identity = 86/141 (60.99%), Postives = 106/141 (75.18%), Query Frame = 2
Query:  197 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGW 147          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 2.417e-45
Identity = 86/141 (60.99%), Postives = 106/141 (75.18%), Query Frame = 2
Query:  197 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGW 147          
The following BLAST results are available for this feature:
BLAST of DN134940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
R13A4_ARATH1.776e-7286.1860S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
R13A1_ARATH1.151e-7183.5560S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
R13A2_ARATH2.565e-7184.8760S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
R13A3_ARATH1.273e-7083.5560S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
RL13A_PICMA2.032e-6880.9260S ribosomal protein L13a OS=Picea mariana GN=RPL... [more]
RL13A_LUPLU3.244e-6681.5860S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
RL13A_CYAPA4.707e-4965.0360S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
RL13A_PONAB2.417e-4560.9960S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]
RL13A_MACFA2.417e-4560.9960S ribosomal protein L13a OS=Macaca fascicularis ... [more]
RL13A_HUMAN2.417e-4560.9960S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]

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Properties
Property NameValue
Genbank descriptionwca03f05 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03f05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134940 ID=DN134940; Name=DN134940; organism=Citrus sinensis; type=EST; length=620bp
GAGAGAGAGAGAGAGCGTTCATGCAACCCTAGAAACCCTAGCTCCACATT
NNNGCCTCACATATATATTTGACAACACTCGGAAACCTCCAGTTCGAGAG
AGGGAGAGAGAGCAGAAGAGGGAGAGAAAAAGCCAACAAAATAGAGAGAG
AGGAACCCTAATAATGGTGTCGGGATCGGGAATCTGCGCGAAGCGAGTGG
TGGTGGACGCACGCCACCACATGCTGGGGCGGCTGGCGTCGATCGTGGCC
AAGGAGCTCCTCAACGGACAGAAAGTCGTCGCGGTCCGCTGCGAAGAGAT
TTGCATGTCCGGCGGCCTCGTCCGCCAGAAAATGAAGTACATGCGGTTCC
TTCGCAAGCGCATGAACACCAAGCCTTCTCACGGTCCCATCCACTTCCGC
GCCCCTGCCAAGATCTTCTGGCGCACCGTCCGCGGGATGATACCGCATAA
GACCAAGCGTGGAGCTGCAGCACTTGCTCGATTGAAGGCATATGAAGGGG
TCCCTGCACCTTATGACAAGGTGAAGAGAATGGTTATCCCCGACGCTCTC
AAGGTTTTGAGGCTTCAAAAGGGTCACAAGTACTGCTTGTTAGGTCGCCT
GGCATCTGAGGTTGGATGGA
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