DN134864

Overview
NameDN134864
Unique NameDN134864
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5674 contig Csv1_Contig5674:8..432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN134864 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.531e-14
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:  178 ASSSLFTPSTITVRKHQISPSSISFQGLRPLNTR-AKTPLPKLATSAKRNSFGGIKXXXNTPLVISLSTGLSLFLGRFVFFNF 423
            ++S+L +P+T +      +P+SISF GLRPL    + + LPKL+T+ +++S   ++   +  +VISLSTGLSLFLGRFVFFNF
Sbjct:    4 SASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNF 86
The following BLAST results are available for this feature:
BLAST of DN134864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSAG_ARATH2.531e-1448.19Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionwca02d12 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02d12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134864 ID=DN134864; Name=DN134864; organism=Citrus sinensis; type=EST; length=425bp
CCGGGGGTATGGATNNGAGNNNCGTGATCCATATCTGTGTTTCTATCGCC
GCTAAGCCTGTTCTATTTCTTGCAAAAATTTATCATAATCCAGGAACTCA
AAAACTCCATCATCCATCAAGGCATCAACCAGAACACAAAAAAGAAGGAA
AAAGAGGGGAAAAAAAGAAAAATGGCAGCCTCATCCTCCTTGTTCACACC
CTCCACCATCACCGTCCGAAAACACCAAATTTCACCCTCCAGCATCTCAT
TCCAAGGCCTAAGACCCCTCAACACCAGGGCCAAAACCCCCCTCCCCAAG
CTCGCCACCTCCGCCAAAAGAAACAGCTTCGGCGGCATTAAAGNNNNGCN
NAACACACCACTTGTCATCAGCCTCAGCACTGGCCTCTCCTTGTTCTTGG
GCAGGTTCGTCTTCTTCAACTTCCT
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