DN134855

Overview
NameDN134855
Unique NameDN134855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134855 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.906e-61
Identity = 108/115 (93.91%), Postives = 114/115 (99.13%), Query Frame = 2
Query:  203 EATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 547
            +ATIMGP DSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+D+AKYE+TARSWTQKYAMG
Sbjct:   34 QATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of DN134855 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.795e-61
Identity = 109/115 (94.78%), Postives = 113/115 (98.26%), Query Frame = 2
Query:  203 EATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 547
            +ATIMGP DSPYAGGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+D+AKYE TARSWTQKYAMG
Sbjct:   34 QATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of DN134855 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.473e-61
Identity = 108/115 (93.91%), Postives = 114/115 (99.13%), Query Frame = 2
Query:  203 EATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 547
            +ATIMGP +SPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+D+AKYEATAR+WTQKYAMG
Sbjct:   34 QATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of DN134855 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.473e-61
Identity = 109/115 (94.78%), Postives = 113/115 (98.26%), Query Frame = 2
Query:  203 EATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 547
            +ATIMGP +SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+DK KYE+TARSWTQKYAMG
Sbjct:   34 QATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
BLAST of DN134855 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.104e-60
Identity = 108/115 (93.91%), Postives = 113/115 (98.26%), Query Frame = 2
Query:  203 EATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 547
            +ATIMGP DSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+DK KYE+TAR+WTQKYAMG
Sbjct:   34 QATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          
BLAST of DN134855 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 2.460e-60
Identity = 105/115 (91.30%), Postives = 115/115 (100.00%), Query Frame = 2
Query:  203 EATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 547
            +ATIMGPP+SPYAGGVFLV+IHFPPDYPFKPPKV+F+TKV+HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+D++KYE+TARSWTQKYAMG
Sbjct:   34 QATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of DN134855 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.082e-59
Identity = 104/115 (90.43%), Postives = 113/115 (98.26%), Query Frame = 2
Query:  203 EATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 547
            +ATIMGP DSP+AGGVFLVTIHFPPDYPFKPPKVAFRTKV+HPNINSNGSICLDILKEQWSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH+YK+D+ KYE+TA+SWTQKYAMG
Sbjct:   34 QATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          
BLAST of DN134855 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.342e-57
Identity = 101/114 (88.60%), Postives = 109/114 (95.61%), Query Frame = 2
Query:  203 EATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 544
            +ATIMGP +SPY+GGVFLV IHFPPDYPFKPPKV FRTKVFHPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YK+DK KYEA ARSWTQKYA+
Sbjct:   34 QATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          
BLAST of DN134855 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.474e-53
Identity = 91/114 (79.82%), Postives = 107/114 (93.86%), Query Frame = 2
Query:  203 EATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 544
            +ATIMGP DSPY+GGVF + IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPD+PLVPEIAH+YK+D+A+YEATAR WT+KYA+
Sbjct:   34 QATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYAI 147          
BLAST of DN134855 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.107e-52
Identity = 91/114 (79.82%), Postives = 107/114 (93.86%), Query Frame = 2
Query:  203 EATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 544
            +ATIMGP DSPYAGGVF ++IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YK+D+++YE +AR WT+KYA+
Sbjct:   34 QATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI 147          
The following BLAST results are available for this feature:
BLAST of DN134855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
UBC28_ARATH2.906e-6193.91Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC4_SOLLC3.795e-6194.78Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC8_ARATH6.473e-6193.91Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC10_ARATH6.473e-6194.78Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC9_ARATH1.104e-6093.91SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC11_ARATH2.460e-6091.30Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC30_ARATH2.082e-5990.43Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH4.342e-5788.60Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC1_COLGL8.474e-5379.82Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC4_SCHPO1.107e-5279.82Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionwca02d01 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02d01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134855 ID=DN134855; Name=DN134855; organism=Citrus sinensis; type=EST; length=683bp
CCGGGGCTCTCTNNNGACTTTTGCCTTGAATAACAAAGGCAAGAGATTGT
AGAGGAGAGAGGTCGGGACGGCCAGTAGCCGCCGCAGATCTGCTCCGAAG
CCGTTCCCCTTTCTCACTGCTATTGCCCTCCGATCTCCTTCTTCGCCGCA
CAAGTGTTGCAGATCCTAGGTTTGTTGTGGCTTTAACTTTTAATAATCCG
TTGAAGCAACAATTATGGGCCCCCCTGATAGTCCATATGCAGGAGGTGTA
TTTTTGGTTACCATTCATTTTCCTCCAGATTATCCCTTCAAGCCCCCAAA
GGTTGCTTTTAGGACCAAGGTCTTCCACCCAAACATCAACAGCAATGGAA
GCATATGTCTTGATATCCTTAAAGAACAGTGGAGCCCAGCTCTTACCATT
TCAAAGGTCCTGCTTTCTATCTGCTCGTTGCTTACTGACCCAAATCCTGA
CGACCCGCTTGTACCGGAGATTGCTCACATGTACAAGTCCGACAAGGCCA
AATATGAAGCCACTGCCAGGAGCTGGACACAGAAGTATGCCATGGGATAG
TTGTTTGGATATTGCAGAAATGGAACTCATTTATATGAAATATGTTGTGT
TTTTTTCTCCTTTTTCTTCAATCTTGCTTCGGGAAGGGGATGTTTTGTAT
TTTAGTANTGAGGAANNATGTTTGGGGANGAGT
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