DN134853

Overview
NameDN134853
Unique NameDN134853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5672 contig Csv1_Contig5672:1..448. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DN134853 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 6.024e-39
Identity = 82/97 (84.54%), Postives = 84/97 (86.60%), Query Frame = 2
Query:  143 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLGTISRTGIMEKNDLTPAVREDSEAXXXWVXXXXXGXYRPENQAVEIDPAKLREMLLNHKVRAH 433
            MARSLFKAKLLLAPVADGISLSI RRGYAAAAPLGTISRTGIMEKNDL PAVREDS A   W      G YRPEN+AVEIDPA+LREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of DN134853 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.010e-14
Identity = 46/104 (44.23%), Postives = 59/104 (56.73%), Query Frame = 2
Query:  143 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSEAXXX-----WVXXXXXGXYRPENQAVEIDPAKLREMLLNHKVRA 430
            MARS+   KLL A + DG+ +SI RRGY+ A P     +  R G M K +   A++E S +        W      G YRPEN   EID A+LREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of DN134853 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.652e-12
Identity = 44/104 (42.31%), Postives = 56/104 (53.85%), Query Frame = 2
Query:  143 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSEAXXX-----WVXXXXXGXYRPENQAVEIDPAKLREMLLNHKVRA 430
            MARS+   K L A V D + +SI RRGY+ A P     +  R G M K +   A++E S +        W      G YRPEN   EID A LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of DN134853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI6.024e-3984.54Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI3.010e-1444.23Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI1.652e-1242.31Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionwca02c08 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02c08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134853 ID=DN134853; Name=DN134853; organism=Citrus sinensis; type=EST; length=448bp
CACAGCACAAAGAGAGCGAGCCGCTAGCTTTTGCCTATAGCTACTGCAGG
AGCAGAATCTTTCTTCTTCTGTAGTAGCACTGTACAGAAACATCCCAGCT
AGCTATCTTCATATCTATTAAGTTCTATAAGTAAATAAAACAATGGCCCG
CTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCTGATGGCATCT
CGCTCTCCATTGGCAGGAGAGGATATGCTGCAGCAGCACCCTTGGGAACC
ATATCTCGGACTGGTATCATGGAGAAAAATGATTTGACGCCTGCGGTGAG
AGAGGATTCTGAGGCNNCTNNNNNNTGGGTTTTNNATNNNNCCNNTGGGN
NNTACAGGCCGGAGAATCAGGCGGTCGAGATTGATCCAGCAAAGCTTCGA
GAGATGCTGTTGAACCACAAAGTCAGGGCACACTAGGGAGTGGTCGCG
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