DN134852

Overview
NameDN134852
Unique NameDN134852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12997 contig Csv1_Contig12997:13..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN134852 vs. ExPASy Swiss-Prot
Match: SC61B_ARATH (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.153e-15
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 2 
Query:  185 TMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVMGKLY 307
            +MLQFYTDDAPGLKISPNVVL+MSIGFIAFVAVLHVMGKLY
Sbjct:   39 SMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGKLY 79
The following BLAST results are available for this feature:
BLAST of DN134852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SC61B_ARATH2.153e-1595.12Protein transport protein Sec61 subunit beta OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionwca02c05 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02c05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134852 ID=DN134852; Name=DN134852; organism=Citrus sinensis; type=EST; length=562bp
GGCCGGGGGNNNNAAATTTGCAATTGCTGCTTCTTGGACGATCTGAAATT
TTTCGAGTGGAGTCAAAATGGCTTTGACCGGACCTGCACCGCCCAGAGGA
AGCGCAGCAGCTACTGCAAATATGCGTAGGAGGAGGACGAGCAGTGCTGG
GGCTGGGGCTGGGGCCTCGGGAGGTGCAGCTGGTACCATGCTCCAGTTTT
ACACAGATGATGCTCCAGGACTTAAGATCTCTCCGAATGTTGTGCTTGTC
ATGAGCATTGGATTCATTGCCTTTGTTGCTGTTCTTCATGTCATGGGAAA
GCTTTACTTGTCCGAAAAGAGTAGAGCAGCCTGAATTTGATAGCATACNN
NATCTAAATTCGGTATGATGTGTCTGGATTTTGAAAACCAGATTTAGTTT
TCGTTCAGTTTACTGGTGGTTGAGGTTGCTTAATGTAGTTGTAACTCTGG
AGAGAATGACTCTTATTCAATGCCTTAAAGACTGCAAAATACCAATCTTT
GTTTCTTTTAATTGAAAATGTTACTATTTGGATAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
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