DN134850

Overview
NameDN134850
Unique NameDN134850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13291 contig Csv1_Contig13291:85..533. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DN134850 vs. ExPASy Swiss-Prot
Match: Y8111_DICDI (DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum GN=DDB_G0278111 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 7.655e-18
Identity = 46/90 (51.11%), Postives = 67/90 (74.44%), Query Frame = 1
Query:  106 QELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVXEXRLISLLE 375
            Q+L   QG G    ++Q Q+AQ   ++EA+ERRQ +L QIL+ +ARE  +RI +VKPEK+R +ED+I+R+AQ GQ+ E+V + +LISLLE
Sbjct:    9 QQLSQMQGQGFDPEAQQRQEAQ---RQEANERRQGILIQILTPDARERLSRITIVKPEKSRQIEDLIIRAAQTGQLTERVDDAKLISLLE 95          
BLAST of DN134850 vs. ExPASy Swiss-Prot
Match: PDCD5_PONAB (Programmed cell death protein 5 OS=Pongo abelii GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 6.066e-15
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   64 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVXEXRLISLLE 375
            MAD ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR   + +ALVKPEK + VE+ +++ A+ GQ+ EKV E  LI +L+
Sbjct:    1 MADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILK 97          
BLAST of DN134850 vs. ExPASy Swiss-Prot
Match: PDCD5_HUMAN (Programmed cell death protein 5 OS=Homo sapiens GN=PDCD5 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 6.066e-15
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   64 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVXEXRLISLLE 375
            MAD ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR   + +ALVKPEK + VE+ +++ A+ GQ+ EKV E  LI +L+
Sbjct:    1 MADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILK 97          
BLAST of DN134850 vs. ExPASy Swiss-Prot
Match: YF69_SCHPO (Uncharacterized protein C23C4.09c OS=Schizosaccharomyces pombe GN=SPAC23C4.09c PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.922e-15
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   70 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVXEXRLISLLE 375
            D EL+AIRQ R+ +L A+ G  +  N      + +  +   DE RQ +LSQIL   AR+   RIALV+ ++A  VE+++LR A+ GQI  K+ E  LI LLE
Sbjct:    2 DEELQAIRQARLAQLQAEHG-SAPSNIASGPSSNQQQQEVQDEMRQNLLSQILEHPARDRLRRIALVRKDRAEAVEELLLRMAKTGQISHKISEPELIELLE 102          
BLAST of DN134850 vs. ExPASy Swiss-Prot
Match: PDCD5_MOUSE (Programmed cell death protein 5 OS=Mus musculus GN=Pdcd5 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.035e-14
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   64 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVXEXRLISLLE 375
            MAD ELEA+R++R+ EL A+ G       +    AQ++AK+   E R  +L+Q+L   AR   + +ALVKPEK + VE+ +++ A+ GQ+  KV E  LI +LE
Sbjct:    1 MADEELEALRKQRLAELQAKHG-------DPGDAAQQEAKQREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILE 97          
BLAST of DN134850 vs. ExPASy Swiss-Prot
Match: PDCD5_BOVIN (Programmed cell death protein 5 OS=Bos taurus GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 3.932e-14
Identity = 42/104 (40.38%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   64 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVXEXRLISLLE 375
            MA+ ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR   + +ALVKPEK + VE+ +++ A+ GQ+  KV E  LI +LE
Sbjct:    1 MAEQELEALRKQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILE 97          
BLAST of DN134850 vs. ExPASy Swiss-Prot
Match: Y1619_METKA (DNA-binding protein MK1619 OS=Methanopyrus kandleri GN=MK1619 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.347e-13
Identity = 42/106 (39.62%), Postives = 67/106 (63.21%), Query Frame = 1
Query:   64 MADPELEAIRQRRMQELMA--QQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVXEXRLISLLE 375
            M DPELE IR++++ EL    ++    +   E+ +KA E+A+R A      ML +IL+ EARE  AR+ L +P+ A+ VE+ +L+ AQ GQ+ EK+ E +L  +L+
Sbjct:    1 MTDPELERIRRKKIMELQRKLEESQEKKVEEEREKKALEEAQRRA------MLRRILTPEARERLARVRLARPQLAQAVENYLLQLAQTGQLKEKIDEDQLKRILK 100          
BLAST of DN134850 vs. ExPASy Swiss-Prot
Match: Y708_METS3 (DNA-binding protein Msm_0708 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0708 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.415e-13
Identity = 39/101 (38.61%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   76 ELEAIRQRRMQELMAQQGV--GSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVXEXRLISLL 372
            +L+ IR++RM EL A+Q    G  Q   Q Q  Q++A+R+ +E+++ +++QIL+TEAR   A + L KPE    +E  +++SAQ G +  KV + +L  LL
Sbjct:    3 DLDEIRRKRMAELEARQAAAQGQMQQQAQQQMQQQEAQRQFEEQKKALIAQILTTEARSRLANLKLTKPELVNQIEIQLIQSAQAGSLRGKVTDEQLKVLL 103          
BLAST of DN134850 vs. ExPASy Swiss-Prot
Match: Y1087_PYRFU (DNA-binding protein PF1087 OS=Pyrococcus furiosus GN=PF1087 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 41/102 (40.20%), Postives = 65/102 (63.73%), Query Frame = 1
Query:   76 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREA---DERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVXEXRLISLL 372
            ++E IR+R++ EL        Q+   + QKAQE+A+R+    + + Q +L +IL+ EARE  AR+ LVKPE AR VE I+++  Q GQI EK+ + ++  +L
Sbjct:    4 DIEEIRRRKLMEL--------QKKYLEQQKAQEEAERQQALIEAQIQAILRRILTPEARERLARVKLVKPELARQVELILVQLYQAGQITEKIDDAKMKKIL 97          
BLAST of DN134850 vs. ExPASy Swiss-Prot
Match: Y536_METPE (DNA-binding protein Mpal_0536 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=Mpal_0536 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   64 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVXEXRLISLL 372
            M D EL  +R+RRM +L +QQ           Q+  ++ K+ A    QM L QIL  EARE    I L KPE A GVE  ++  AQ G+I +K+ + +L  LL
Sbjct:    1 MGDDELAELRRRRMAQLQSQQ---------MDQQQMDEEKQRAKSAMQMALMQILEPEARERLNTIRLTKPEFAAGVEQQLVMLAQSGRIKQKISDAQLKDLL 94          
The following BLAST results are available for this feature:
BLAST of DN134850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
Y8111_DICDI7.655e-1851.11DNA-binding protein DDB_G0278111 OS=Dictyostelium ... [more]
PDCD5_PONAB6.066e-1541.35Programmed cell death protein 5 OS=Pongo abelii GN... [more]
PDCD5_HUMAN6.066e-1541.35Programmed cell death protein 5 OS=Homo sapiens GN... [more]
YF69_SCHPO7.922e-1543.14Uncharacterized protein C23C4.09c OS=Schizosacchar... [more]
PDCD5_MOUSE1.035e-1441.35Programmed cell death protein 5 OS=Mus musculus GN... [more]
PDCD5_BOVIN3.932e-1440.38Programmed cell death protein 5 OS=Bos taurus GN=P... [more]
Y1619_METKA4.347e-1339.62DNA-binding protein MK1619 OS=Methanopyrus kandler... [more]
Y708_METS37.415e-1338.61DNA-binding protein Msm_0708 OS=Methanobrevibacter... [more]
Y1087_PYRFU1.398e-1140.20DNA-binding protein PF1087 OS=Pyrococcus furiosus ... [more]
Y536_METPE4.069e-1139.81DNA-binding protein Mpal_0536 OS=Methanosphaerula ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca02c03 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02c03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134850 ID=DN134850; Name=DN134850; organism=Citrus sinensis; type=EST; length=449bp
GGGAAGGAAGCAGAAACAGAGTTCAGAGTAGGCAGCGTTTGCTCATCGAT
CCATTCAAATCAAATGGCTGACCCTGAACTAGAAGCAATTAGACAAAGAA
GAATGCAAGAGCTCATGGCCCAACAAGGCGTGGGGAGTCAACAAAATTCT
GAGCAGCATCAGAAAGCTCAGGAAGATGCCAAGAGGGAGGCAGATGAACG
GAGACAAATGATGCTTAGCCAGATTTTGTCAACCGAAGCACGTGAAAGTT
TTGCTCGAATTGCTTTGGTGAAACCCGAGAAGGCTAGAGGTGTTGAGGAC
ATTATATTGAGATCCGCCCAAATGGGTCAGATAGTTGAGAAGGTTNNCGA
ANNNAGGCTCATATCATTGCTGGAACAGATTAACACCCAAACCACCAAAC
AGACCAAAGTCACAATCCAAAGGCGCCGGAGTGTTTTGGAAAATGATGA
back to top