DN134846

Overview
NameDN134846
Unique NameDN134846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:83..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.981e-54
Identity = 104/117 (88.89%), Postives = 111/117 (94.87%), Query Frame = 2
Query:  116 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 466
            AAEEGQVIGCHTVEAWNEQLQK N+TK L+VV DFTASWCGPCRFIAPFLAELAKKLPNV FLKVDVDELKTVA +WAVE+MPT MFLKEGKI+DKVVGAKK+ELQQTIAKH+ATAS
Sbjct:    2 AAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVV-DFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 7.788e-51
Identity = 96/114 (84.21%), Postives = 106/114 (92.98%), Query Frame = 2
Query:  116 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHLA 457
            A+EEGQVI CHTVE WNEQLQK+NE+K LVVV DFTASWCGPCRFIAPF A+LAKKLPNVLFLKVD DELK+VA+DWA++AMPT MFLKEGKI+DKVVGAKK+ELQ TIAKHLA
Sbjct:    2 ASEEGQVIACHTVETWNEQLQKANESKTLVVV-DFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.171e-48
Identity = 93/116 (80.17%), Postives = 104/116 (89.66%), Query Frame = 2
Query:  119 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 466
            AEEGQVIG HTV+AWNE LQK  + K+L+VV DFTASWCGPC+FIA F AELAKK+P V FLKVDVDELK+VATDWAVEAMPT MFLKEGKIVDKVVGAKK+ELQQTIAKH+++ S
Sbjct:    2 AEEGQVIGVHTVDAWNEHLQKGIDDKKLIVV-DFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.890e-45
Identity = 85/120 (70.83%), Postives = 103/120 (85.83%), Query Frame = 2
Query:  107 EMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 466
            +  ++EEGQV GCH VE WNE  +K  ETK+LVVV DFTASWCGPCRFIAP LA++AKK+P+V+FLKVDVDELKTV+ +W+VEAMPT +F+K+GK VD+VVGAKKEELQQTI KH A A+
Sbjct:    5 DATSSEEGQVFGCHKVEEWNEYFKKGVETKKLVVV-DFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPAT 123          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.149e-36
Identity = 67/111 (60.36%), Postives = 91/111 (81.98%), Query Frame = 2
Query:  119 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKH 451
            A EG+VI CHT+E WNE+++ +NE+K+L+V+ DFTASWC PCRFIAP  AE+AKK  NV+F K+DVDEL+ VA ++ VEAMPT +F+KEG I+D+VVGA K+E+ + + KH
Sbjct:    2 AGEGEVIACHTLEVWNEKVKDANESKKLIVI-DFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.335e-34
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2
Query:  116 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 469
            AAEEG VI CH  + ++ Q+ K+ E  + VV++DFTASWCGPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPT +F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:    2 AAEEGVVIACHNKDEFDAQMTKAKEAGK-VVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.335e-34
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2
Query:  116 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 469
            AAEEG VI CH  + ++ Q+ K+ E  + VV++DFTASWCGPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPT +F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:    2 AAEEGVVIACHNKDEFDAQMTKAKEAGK-VVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.973e-34
Identity = 69/119 (57.98%), Postives = 91/119 (76.47%), Query Frame = 2
Query:  116 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 469
            AAEEGQVIGCH ++ W  QL  + ++ +L+V+ DFTASWC PCR IAP  A+LAKK + + +F KVDVDEL+ VA ++ VEAMPT + +K+G +VDKVVGA+KE+L  TIAKH   A+A
Sbjct:    2 AAEEGQVIGCHEIDVWAVQLDTAKQSNKLIVI-DFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGVATA 119          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.883e-34
Identity = 66/111 (59.46%), Postives = 89/111 (80.18%), Query Frame = 2
Query:  119 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKH 451
            AEE QVI CHTV+ WNE+ QK+ ++ +L+V+ DFTASWCGPCR I P+++ELAKK P+V F KVDVD+LK VA ++ VEAMP+ + LKEG+ V+++VGA+K+EL   IA H
Sbjct:    2 AEEAQVIACHTVQEWNEKFQKAKDSGKLIVI-DFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.072e-34
Identity = 66/114 (57.89%), Postives = 86/114 (75.44%), Query Frame = 2
Query:  125 EGQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 466
            EG V  CH+ E W  +LQ++ +TK+LV V DFTA+WCGPCR I P   EL+KK P + FLKVDVDEL+ VA +W VEAMPT +F+K+GK VDKVVGAKK++L++ +A   A A+
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAV-DFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAALAAAAT 115          
The following BLAST results are available for this feature:
BLAST of DN134846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
TRXH_RICCO1.981e-5488.89Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH7.788e-5184.21Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC6.171e-4880.17Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC4.890e-4570.83Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH5_ARATH4.149e-3660.36Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_ORYSJ1.335e-3459.32Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI1.335e-3459.32Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH2_BRANA2.973e-3457.98Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH_FAGES3.883e-3459.46Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH_PICMA5.072e-3457.89Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionwca02b08 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02b08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134846 ID=DN134846; Name=DN134846; organism=Citrus sinensis; type=EST; length=591bp
TACGGCCGGGAAGAACCCCATACGCAAATCACCAAGAGCAAGAAAGCGAG
GGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGG
AAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACAC
CGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGC
TGGTAGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTC
ATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTT
TCTGAAGGTTGATGTGGATGAACTGAAGACTGTTGCCACTGACTGGGCAG
TGGAGGCCATGCCAACTCTCATGTTCCTGAAAGAGGGGAAGATTGTGGAC
AAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCA
TCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTG
GCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTT
ATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGNNTGAA
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