DN134845

Overview
NameDN134845
Unique NameDN134845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:130..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.893e-55
Identity = 103/116 (88.79%), Postives = 111/116 (95.69%), Query Frame = 2
Query:   68 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 415
            AAEEGQVIGCHTVEAWNEQLQK N+TK L+VVDFTASWCGPCRFIAPFLAELAKKLPNV FLKVDVDELK+VA +WAVE+MPTF FLKEGKI+DKVVGAKK+ELQQTIAKH+ATAS
Sbjct:    2 AAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.755e-52
Identity = 97/113 (85.84%), Postives = 106/113 (93.81%), Query Frame = 2
Query:   68 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTIAKHLA 406
            A+EEGQVI CHTVE WNEQLQK+NE+K LVVVDFTASWCGPCRFIAPF A+LAKKLPNVLFLKVD DELKSVA+DWA++AMPTF FLKEGKI+DKVVGAKK+ELQ TIAKHLA
Sbjct:    2 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.391e-49
Identity = 94/115 (81.74%), Postives = 104/115 (90.43%), Query Frame = 2
Query:   71 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 415
            AEEGQVIG HTV+AWNE LQK  + K+L+VVDFTASWCGPC+FIA F AELAKK+P V FLKVDVDELKSVATDWAVEAMPTF FLKEGKIVDKVVGAKK+ELQQTIAKH+++ S
Sbjct:    2 AEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.880e-46
Identity = 85/119 (71.43%), Postives = 103/119 (86.55%), Query Frame = 2
Query:   59 EMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 415
            +  ++EEGQV GCH VE WNE  +K  ETK+LVVVDFTASWCGPCRFIAP LA++AKK+P+V+FLKVDVDELK+V+ +W+VEAMPTF F+K+GK VD+VVGAKKEELQQTI KH A A+
Sbjct:    5 DATSSEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPAT 123          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.197e-38
Identity = 68/110 (61.82%), Postives = 92/110 (83.64%), Query Frame = 2
Query:   71 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTIAKH 400
            A EG+VI CHT+E WNE+++ +NE+K+L+V+DFTASWC PCRFIAP  AE+AKK  NV+F K+DVDEL++VA ++ VEAMPTF F+KEG I+D+VVGA K+E+ + + KH
Sbjct:    2 AGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.008e-36
Identity = 70/118 (59.32%), Postives = 92/118 (77.97%), Query Frame = 2
Query:   68 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 418
            AAEEGQVIGCH ++ W  QL  + ++ +L+V+DFTASWC PCR IAP  A+LAKK + + +F KVDVDEL++VA ++ VEAMPTF  +K+G +VDKVVGA+KE+L  TIAKH   A+A
Sbjct:    2 AAEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGVATA 119          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.929e-36
Identity = 67/110 (60.91%), Postives = 89/110 (80.91%), Query Frame = 2
Query:   71 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTIAKH 400
            AEE QVI CHTV+ WNE+ QK+ ++ +L+V+DFTASWCGPCR I P+++ELAKK P+V F KVDVD+LK VA ++ VEAMP+F  LKEG+ V+++VGA+K+EL   IA H
Sbjct:    2 AEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.929e-36
Identity = 71/118 (60.17%), Postives = 90/118 (76.27%), Query Frame = 2
Query:   68 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 418
            AAEEGQVIGCHT + W  QL K+ E+ +L+V+DFTASWC PCR IAP   +LAKK + + +F KVDVDEL+SVA ++ VEAMPTF F+K G++VDK+VGA KE+LQ  I KH    +A
Sbjct:    2 AAEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGVTTA 119          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.131e-36
Identity = 70/117 (59.83%), Postives = 88/117 (75.21%), Query Frame = 2
Query:   68 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 418
            AAEEG VI CH  + ++ Q+ K+ E  ++V++DFTASWCGPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:    2 AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.131e-36
Identity = 70/117 (59.83%), Postives = 88/117 (75.21%), Query Frame = 2
Query:   68 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 418
            AAEEG VI CH  + ++ Q+ K+ E  ++V++DFTASWCGPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:    2 AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
The following BLAST results are available for this feature:
BLAST of DN134845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
TRXH_RICCO2.893e-5588.79Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH1.755e-5285.84Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC1.391e-4981.74Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC1.880e-4671.43Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH5_ARATH4.197e-3861.82Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_BRANA3.008e-3659.32Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH_FAGES3.929e-3660.91Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH4_ARATH3.929e-3660.17Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_ORYSJ5.131e-3659.83Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI5.131e-3659.83Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]

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Properties
Property NameValue
Genbank descriptionwca02b07 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02b07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134845 ID=DN134845; Name=DN134845; organism=Citrus sinensis; type=EST; length=659bp
TACGGCCGGGGANGAAGTATCGTTGGGTGGAGTAGTGGTGGTATAACCGC
GGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCAC
ACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACA
GCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCA
TTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTT
CTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGT
GGAGGCCATGCCAACTTTCACGTTCCTGAAAGAGGGGAAGATTGTGGACA
AGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCAT
CTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGG
CTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTA
TTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAA
TTTACTGTTCCATGAAGCTCATACTGTGGTCTTTACAATAATTTNNNTTC
ATATTTGTTGTTGACCCTAATTTTGACGTAAAANNAAAAAAAAAAAAAAA
AAAAAAAAA
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