DN134800

Overview
NameDN134800
Unique NameDN134800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN134800_ssr30 microsatellite DN134800_ssr30:30..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4526 contig Csv1_Contig4526:11..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 5.583e-104
Identity = 183/229 (79.91%), Postives = 198/229 (86.46%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            MGRKFFVGGNWKCNGT EEVKKI++ LN                 ++FL LVK+ LRPDFHVAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L ESNEFVGDKVAYALSQGLKVIACVGETLE+RE+GSTMDVVAAQTKAIADRV  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL AN SPE+AA+TRIIYGGSVNGANCKEL  QPDVDG
Sbjct:    1 MGRKFFVGGNWKCNGTAEEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDG 229          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 370.163 bits (949), Expect = 6.825e-102
Identity = 179/229 (78.17%), Postives = 196/229 (85.59%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            MGRKFFVGGNWKCNGT ++V+KIV  LNEGQ              ++FL +VKS LR +FHVAAQNCWVKKGGAFTGE+SAEMLVNLG+PWVILGHSERR +L ESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA+++  WSN+V+AYEPVWAIGTGKVATPAQAQEVH  LR WL  N SPE+A +TRIIYGGSV  ANCKELAAQPDVDG
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDG 229          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 366.696 bits (940), Expect = 7.546e-101
Identity = 181/229 (79.04%), Postives = 196/229 (85.59%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            M RKFFVGGNWKCNGT EEVKKIV+ LNE Q              ++FL LVKS+LR DF VAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR ILNES+EFVGDKVAYAL+QGLKVIACVGETLE+REAGSTMDVVAAQTKAIADRV++WSN+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL  N S ++AA TRIIYGGSVNG NCKEL  Q DVDG
Sbjct:    1 MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDG 229          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 2.195e-100
Identity = 177/229 (77.29%), Postives = 196/229 (85.59%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            MGRKFFVGGNWKCNGT EEVKKIV++LNE +              ++FL  VK+ LR DFHVAAQNCWVKKGGAFTGE+SAEMLVNLGIPWVILGHSERR +LNESNEFVGDK AYALSQGLKVIACVGETLEQREAGST+ VVAAQTKAIA++VS W+NIV+AYEPVWAIGTGKVA+PAQAQEVHFELRKW+  N   ++A + RIIYGGSVNGAN KELA QPD+DG
Sbjct:    1 MGRKFFVGGNWKCNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDG 229          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 362.073 bits (928), Expect = 1.859e-99
Identity = 176/229 (76.86%), Postives = 195/229 (85.15%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            MGRKFFVGGNWKCNGT ++V KIV +LNEGQ              ++FL +VKS LRP+  VAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L ESNEFVGDKVAYALSQGLKVIACVGETLEQRE+GSTMDVVAAQTKAI++R+  W+N+V+AYEPVWAIGTGKVATP QAQEVH  LRKWL AN S E+A +TRIIYGGSV GANCKELAA+PDVDG
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDG 229          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 350.517 bits (898), Expect = 5.596e-96
Identity = 170/229 (74.24%), Postives = 191/229 (83.41%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            MGRKFFVGGNWKCNGT  +V+ IV+ LN GQ              ++FL  VK  LRP+  VAAQNCWVKKGGAFTGE+SAEMLVNLGIPWVILGHSERR +L ES+EFVG+KVAYAL+QGLKVIACVGETLEQREAGSTM+VVA QTKAIAD++  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH  LR WL  N SPE+A +TRIIYGGSV GA+CKELAAQPDVDG
Sbjct:    1 MGRKFFVGGNWKCNGTVSQVETIVNTLNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDG 229          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 346.665 bits (888), Expect = 8.081e-95
Identity = 169/229 (73.80%), Postives = 189/229 (82.53%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            MGRKFFVGGNWKCNGT E+V+ IV  LN GQ              ++FL +VK+ LRP+  VAAQNCWVKKGGAFTGE+SAEML NLG+PWVILGHSERR +L ES+EFVG+KVAYAL+QGLKVIACVGETLEQREAGSTM+VVA QTKAIA ++  WSN V+AYEPVWAIGTGKVATPAQAQEVH  LR WL  N SPE+A +TRIIYGGSV GA+CKELAAQ DVDG
Sbjct:    1 MGRKFFVGGNWKCNGTVEQVEAIVQTLNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDG 229          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.060e-78
Identity = 140/168 (83.33%), Postives = 155/168 (92.26%), Query Frame = 1
Query:  244 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            VAAQNCWVKKGGAFTGE+SAEML NLG+PWVILGHSERR +LNE+NEFVGDKVAYALSQGLKVIACVGETLEQREAG+TM+VVAAQTKAIAD++SSW N+VLAYEPVWAIGTGKVA+PAQAQEVH  LRKW   N S E++A+TRIIYGGSV+G+NCKEL  Q DVDG
Sbjct:    3 VAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDG 170          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.000e-77
Identity = 146/230 (63.48%), Postives = 164/230 (71.30%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            MGRKFFVGGNWKCNGT E V KIV  LNE                ++FL    + L+ +  VAAQNCWVKKGGAFTGE+SA+ML NLGI WVILGHSERR +L ESNEFVG K AYA S+GL VIAC+GE LE+REAG T DV   Q K+ A      W N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S E+A+ TRIIYGGSVNG N   LAAQ DVDG
Sbjct:    1 MGRKFFVGGNWKCNGTQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDG 230          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.444e-75
Identity = 138/226 (61.06%), Postives = 162/226 (71.68%), Query Frame = 1
Query:   70 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            KFFVGGNWKCNGT E + K+VS LN                 F+++  VKSSL     ++AQNCW+ KGGAFTGEIS E L +LG  WVILGHSERR ++ E NEF+G K AYAL+QG+ VIAC+GE LE+REAG T DV   Q KA AD + SW N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S E+A+ TRIIYGGSVNG NC ELA Q D+DG
Sbjct:   72 KFFVGGNWKCNGTKESITKLVSDLNSATLEADVDVVVAPP--FVYIDQVKSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYALNQGVGVIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGSVNGGNCAELAKQEDIDG 295          
The following BLAST results are available for this feature:
BLAST of DN134800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PETHY5.583e-10479.91Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_MAIZE6.825e-10278.17Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ARATH7.546e-10179.04Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_COPJA2.195e-10077.29Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_ORYSJ1.859e-9976.86Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_SECCE5.596e-9674.24Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_HORVU8.081e-9573.80Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_LACSA1.060e-7883.33Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_STELP2.000e-7763.48Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIC_SPIOL2.444e-7561.06Triosephosphate isomerase, chloroplastic OS=Spinac... [more]

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Properties
Property NameValue
Genbank descriptionwca01d11 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01d11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134800 ID=DN134800; Name=DN134800; organism=Citrus sinensis; type=EST; length=749bp
CGGCCGGGGNNNATAGAAAATAAAACATAACACACACACCGACACACGCA
CTCGTCGAACATGGGCAGGAAGTTCTTCGTCGGCGGTAACTGGAAATGCA
ATGGAACACCTGAAGAAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGT
CAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCT
GTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGG
CACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGT
GCGGAAATGCTCGTCAATTTGGGTATTCCTTGGGTCATTCTTGGTCATTC
TGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGGGGATAAGG
TTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAG
ACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTTGCTGCACA
AACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGG
CCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCACTCCAGCG
CAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTTGCAAACAC
CAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGGATCCGTAA
ATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTGACGGATT
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