DN134795

Overview
NameDN134795
Unique NameDN134795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:15..504. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 2.602e-71
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 1
Query:   91 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 489
            KTRGMGA RKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE
Sbjct:    3 KTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 135          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 2.203e-70
Identity = 130/133 (97.74%), Postives = 130/133 (97.74%), Query Frame = 1
Query:   91 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 489
            KT GMGA RKLKSHRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE
Sbjct:    3 KTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 135          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 1.579e-68
Identity = 128/133 (96.24%), Postives = 128/133 (96.24%), Query Frame = 1
Query:   91 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 489
            KTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE
Sbjct:    3 KTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 135          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 7.334e-66
Identity = 125/133 (93.98%), Postives = 126/133 (94.74%), Query Frame = 1
Query:   91 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 489
            KTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE
Sbjct:    3 KTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 135          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 6.648e-59
Identity = 108/134 (80.60%), Postives = 118/134 (88.06%), Query Frame = 1
Query:   91 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 489
            K RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K+
Sbjct:    3 KPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQ 136          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 2.526e-58
Identity = 108/134 (80.60%), Postives = 117/134 (87.31%), Query Frame = 1
Query:   91 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 489
            K RG+   RK +SHRR QRW DK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KE
Sbjct:    3 KPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKE 136          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.139e-57
Identity = 105/134 (78.36%), Postives = 117/134 (87.31%), Query Frame = 1
Query:   91 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 489
            K RG+   RK  +HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KE
Sbjct:    3 KPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKE 136          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.139e-57
Identity = 105/134 (78.36%), Postives = 117/134 (87.31%), Query Frame = 1
Query:   91 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 489
            K RG+   RK  +HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KE
Sbjct:    3 KPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKE 136          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS23_DROME (40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 4.765e-57
Identity = 107/134 (79.85%), Postives = 116/134 (86.57%), Query Frame = 1
Query:   91 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 489
            K RG+   RK  +HRR QRWADK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DG LNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KE
Sbjct:    3 KPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKE 136          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 4.765e-57
Identity = 104/133 (78.20%), Postives = 117/133 (87.97%), Query Frame = 1
Query:   91 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486
            K +G+ A RKLK+HR+ QRW DK YKK+HLG  WK  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFK+VKV+  SL+ALFK
Sbjct:    3 KPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFK 135          
The following BLAST results are available for this feature:
BLAST of DN134795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_FRAAN2.602e-7198.5040S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES2.203e-7097.7440S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH1.579e-6896.2440S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH7.334e-6693.9840S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_LUMRU6.648e-5980.6040S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_DERVA2.526e-5880.6040S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_SPOFR2.139e-5778.3640S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_PAPDA2.139e-5778.3640S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]
RS23_DROME4.765e-5779.8540S ribosomal protein S23 OS=Drosophila melanogast... [more]
RS23_BRUMA4.765e-5778.2040S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]

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Properties
Property NameValue
Genbank descriptionwca01d05 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01d05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134795 ID=DN134795; Name=DN134795; organism=Citrus sinensis; type=EST; length=491bp
GGCCGGGGNNTCGCGGCGTCCTCTTGCACTCTCAAGCTCCAAAGTCGTTC
GTTACAGTAAAAAATCCTCTTCGTAACGCCAACANNNNGGAAGACACGTG
GAATGGGAGCTGGTCGCAAGCTGAAGAGCCACCGCAGAAGACAAAGGTGG
GCTGATAAGTCATACAAGAAATCCCACCTTGGCAATGAATGGAAGAAGCC
ATTTGCTGGCTCTTCCCATGCAAAAGGCATTGTTCTTGAGAAAATCGGTA
TCGAGGCAAAGCAGCCCAACTCTGCTATCAGAAAATGCGCTCGAGTTCAG
CTGATCAAGAATGGAAAGAAGATTGCAGCTTTCGTACCAAACGATGGTTG
TTTGAACTACATTGAAGAAAATGACGAGGTACTTATTGCAGGATTTGGTC
GAAAGGGGCATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTC
AAGGTTTCAGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAA
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