DN134790

Overview
NameDN134790
Unique NameDN134790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN134790_ssr486 microsatellite DN134790_ssr486:486..495. BLAST: Citrus ESTs to Prunus persica proteins V1
DN134790_ssr558 microsatellite DN134790_ssr558:558..569. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5679 contig Csv1_Contig5679:13..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134790 vs. ExPASy Swiss-Prot
Match: SYDC_SCHPO (Aspartyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=dps1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 53/139 (38.13%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  283 ANNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPNVEIKGAT-QQVEVQIKKLYCVSXXAK 696
            A  YGD+PL              S A  GR +T++  ++     Q VL+R RV+T+R  GNK+ F  +R++  T+Q LA V  D++SK+MV++  S+S ESIV V G+V      IK AT Q  E+ I  +Y +S   K
Sbjct:   73 AGKYGDLPLNR------------STARPGRTYTQISDISAKNDGQTVLLRARVYTSRLQGNKMCFFSLRQKYDTIQALAVVNKDTISKQMVKWCGSISLESIVLVEGIVKKSPEIIKSATVQDAEIHISSIYVISPIKK 199          
BLAST of DN134790 vs. ExPASy Swiss-Prot
Match: SYDC1_DICDI (Aspartyl-tRNA synthetase, cytoplasmic 1 OS=Dictyostelium discoideum GN=aspS1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.003e-14
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  286 NNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPNVEIKGATQQ-VEVQIKKLYCVSXXAKTPITI 711
            +N+G++P+ +            S+    REWT+V  L  SL  + VLIR R+ T+R  G  L FV +R+ + TVQ +   K  S SK MV+FV  +  ESIVDV   V   +V I+  TQ+ VE+Q+   + VS     P+ I
Sbjct:   68 SNWGELPMNQ------------SKEKITREWTDVSQLTESLVGKSVLIRARLSTSRLQGANLCFVQLRDGLYTVQAV-VAKGGSNSKSMVQFVGQVPKESIVDVQATVVSTSVPIESCTQKSVELQVSSFFIVSKSTLLPLQI 197          
BLAST of DN134790 vs. ExPASy Swiss-Prot
Match: SYDC_YEAST (Aspartyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=DPS1 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 52/135 (38.52%), Postives = 76/135 (56.30%), Query Frame = 1
Query:  286 NNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATV-KPDSVSKEMVRFVRSLSNESIVDVIGVVSVPNVEIKGAT-QQVEVQIKKLYCVS 684
            +NYG +PL  +QS +  +TG+       +    V        D+EVL R RVH TR  G  LAF+ +R++ S +Q L    K  ++SK MV++  SL+ ESIV V G+V   +  IK AT Q +E+ I K+Y +S
Sbjct:   73 DNYGKLPL--IQSRDSDRTGQ-------KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTIS 198          
BLAST of DN134790 vs. ExPASy Swiss-Prot
Match: SYDC_PONAB (Aspartyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=DARS PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 47/112 (41.96%), Postives = 67/112 (59.82%), Query Frame = 1
Query:  352 SEAVSGREWTEVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPNVEIKGATQQ-VEVQIKKLYCVS 684
            S+  S R    V  L     D+ V +R RVHT+R  G K  F+V+R++   VQ L  V  D  SK+MV+F  +++ ESIVDV GVV   N +I+  TQQ VE+ ++K+Y +S
Sbjct:   37 SQEKSDRVLVRVRDLTIQKADEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESIVDVEGVVRKVNQKIESCTQQDVELHVQKIYVIS 146          
BLAST of DN134790 vs. ExPASy Swiss-Prot
Match: SYDC_HUMAN (Aspartyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=DARS PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  412 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPNVEIKGATQQ-VEVQIKKLYCVS 684
            D+ V +R RVHT+R  G K  F+V+R++   VQ L  V  D  SK+MV+F  +++ ESIVDV GVV   N +I   TQQ VE+ ++K+Y +S
Sbjct:   57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVIS 146          
BLAST of DN134790 vs. ExPASy Swiss-Prot
Match: SYDC_RAT (Aspartyl-tRNA synthetase, cytoplasmic OS=Rattus norvegicus GN=Dars PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  412 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPNVEIKGATQQ-VEVQIKKLYCVS 684
            D+ V +R RVHT+R  G K  F+V+R++   VQ L  V  D  SK+MV+F  +++ ESI+DV G+V   N +I   TQQ VE+ ++K+Y +S
Sbjct:   57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESIIDVEGIVRKVNQKIGSCTQQDVELHVQKIYVIS 146          
BLAST of DN134790 vs. ExPASy Swiss-Prot
Match: SYDC_CAEEL (Aspartyl-tRNA synthetase, cytoplasmic OS=Caenorhabditis elegans GN=drs-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 46/115 (40.00%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  382 EVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPNVEIKGATQQ-VEVQIKKLYCVSXXA-KTPITIXXA 720
            +V  +N S   ++V +RGR+HTTR  G K  F+V+R+ V TVQ +A    + +SK+M++FV S+S ESIVDV   ++  +  I+  TQ+ VE+  ++++ VS  A K P+ I  A
Sbjct:   71 KVKEINVSNATKDVWVRGRIHTTRSKG-KNCFLVLRQGVYTVQ-VAMFMNEKISKQMLKFVSSISKESIVDVYATINKVDNPIESCTQKDVELLAQQVFVVSTSAPKLPLQIEDA 183          
BLAST of DN134790 vs. ExPASy Swiss-Prot
Match: SYDC_MOUSE (Aspartyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Dars PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  412 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPNVEIKGATQQ-VEVQIKKLYCVS 684
            D  V +R RVHT+R  G K  F+V+R++   VQ L  V  D  SK+MV+F  +++ ESI+DV GVV   N +I   TQQ VE+ ++K+Y +S
Sbjct:   57 DDVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESIIDVEGVVRKVNQKIGSCTQQDVELHVQKIYVIS 146          
BLAST of DN134790 vs. ExPASy Swiss-Prot
Match: SYDC_BOVIN (Aspartyl-tRNA synthetase, cytoplasmic OS=Bos taurus GN=DARS PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  421 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPNVEIKGATQQ-VEVQIKKLYCVS 684
            V +R RVHT+R  G K  F+V+R++   VQ L  V  D  SK+MV+F  +++ ESIVDV GVV   N +I   TQQ VE+ ++K+Y +S
Sbjct:   60 VWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVIS 146          
The following BLAST results are available for this feature:
BLAST of DN134790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SYDC_SCHPO3.702e-1738.13Aspartyl-tRNA synthetase, cytoplasmic OS=Schizosac... [more]
SYDC1_DICDI5.003e-1437.06Aspartyl-tRNA synthetase, cytoplasmic 1 OS=Dictyos... [more]
SYDC_YEAST7.225e-1338.52Aspartyl-tRNA synthetase, cytoplasmic OS=Saccharom... [more]
SYDC_PONAB2.102e-1241.96Aspartyl-tRNA synthetase, cytoplasmic OS=Pongo abe... [more]
SYDC_HUMAN1.363e-1145.65Aspartyl-tRNA synthetase, cytoplasmic OS=Homo sapi... [more]
SYDC_RAT2.324e-1143.48Aspartyl-tRNA synthetase, cytoplasmic OS=Rattus no... [more]
SYDC_CAEEL2.324e-1140.00Aspartyl-tRNA synthetase, cytoplasmic OS=Caenorhab... [more]
SYDC_MOUSE3.035e-1144.57Aspartyl-tRNA synthetase, cytoplasmic OS=Mus muscu... [more]
SYDC_BOVIN6.762e-1146.07Aspartyl-tRNA synthetase, cytoplasmic OS=Bos tauru... [more]
back to top
Properties
Property NameValue
Genbank descriptionwca01c09 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01c09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134790 ID=DN134790; Name=DN134790; organism=Citrus sinensis; type=EST; length=720bp
CCAAAATTTCATCTCTTTGAACCCTGATTATTCACCATTTGTACCAGCAA
GAGAAGCACCCAATCACCGCAGCGATCCGCCATTCATCGCCGATCGAATA
CAATGTCGACCGAGTCCGAACCTCCTAAGGTGCAGGAGGAAGTAGATTCA
TCATCCCAGTCGATAAGCAAAAAGGCGGCGAAGAAAGAAGCCGCCAAGAA
AGCCAAAGAAGAACGCCGCAAGGAAGCCGAAGCCGCAGCCTCCGCCGCGT
CAGCACTCTCGATAGAAGAGGAGGGCCCGCTTGCCAATAACTATGGGGAC
GTCCCTCTCCAAGAGCTCCAATCCGTTAACGATCCACAAACAGGCAAGTG
GAGCGAAGCAGTCAGCGGCAGAGAGTGGACTGAGGTGGGAGCCTTGAACG
GTTCGTTGAAGGACCAGGAAGTACTGATTCGGGGCCGGGTCCACACAACC
CGACCCGTTGGCAACAAGCTGGCATTCGTTGTGGTGAGAGAGAGAGTGTC
GACGGTACAATGCTTGGCCACTGTGAAGCCCGATTCCGTCAGCAAGGAGA
TGGTCAGGTTCGTTCGTTCATTGAGCAACGAGTCCATTGTCGATGTCATC
GGCGTCGTCTCTGTCCCCAATGTTGAGATTAAAGGAGCAACGCAGCAGGT
GGAGGTTCAAATCAAAAAATTGTATTGCGTTAGCANNNCGGCGAAAACAC
CCATTACTATTGANNNTGCC
back to top