DN134787

Overview
NameDN134787
Unique NameDN134787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN134787_ssr471 microsatellite DN134787_ssr471:471..485. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1452 contig Csv1_Contig1452:8..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134787 vs. ExPASy Swiss-Prot
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.914e-23
Identity = 49/95 (51.58%), Postives = 68/95 (71.58%), Query Frame = 2
Query:   68 KMEASHVAAICTLVVLLLAAETQVSVAVTCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 352
            KM+ S V A+  +V L L     V+ AVTC+PT+LSSCV AIT  + PS  CCSK+K Q+PCLC Y++NPSL++++N+P A++V S CG  +P C
Sbjct:    6 KMKMSVVCAV-VVVALFLIDVGPVAEAVTCNPTELSSCVPAITGGSKPSSTCCSKLKVQEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPNC 99          
BLAST of DN134787 vs. ExPASy Swiss-Prot
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.992e-21
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 2
Query:  149 VTCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 352
            VTCSP QLS C+  I S  P    CC K++EQ+PCLC YL+NPSLR+++N+PNAR++AS CG P P+C
Sbjct:    1 VTCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASNCGVPVPQC 68          
BLAST of DN134787 vs. ExPASy Swiss-Prot
Match: NLTP2_HORVU (Probable non-specific lipid-transfer protein OS=Hordeum vulgare GN=LTP2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.506e-15
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 2
Query:   71 MEASHVAAICTLVVLLLAAETQVSVAVTCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 352
            M      A+  ++V+ LAA         C P QL+ C SAI   T PS  CC  ++ Q+ CLCQY+++P+   ++++P+AR   + CG P P C
Sbjct:    9 MRKEAAVAVMMVMVVTLAAGADAGAGAACEPAQLAVCASAILGGTKPSGECCGNLRAQQGCLCQYVKDPNYGHYVSSPHARDTLNLCGIPVPHC 102          
BLAST of DN134787 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP-2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.387e-12
Identity = 32/90 (35.56%), Postives = 51/90 (56.67%), Query Frame = 2
Query:   92 AICTLVVLLLAAETQVSVAV---TCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 352
            A+  L V ++AA     V V   +C+  QL+ C  AI     P+  CCS ++ Q+ C CQ+ ++P   +++N+PNAR+  S+CG   P C
Sbjct:    6 AVLVLAVAMVAACGGGVVGVAGASCNAGQLTVCAGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of DN134787 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSJ (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica GN=LTP-2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.424e-12
Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 2
Query:   92 AICTLVVLLLAAETQVSVAVT---CSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 352
            A+  L V ++AA     V V    C+  QL+ C  AI     P+  CCS ++ Q+ C CQ+ ++P   +++N+PNAR+  S+CG   P C
Sbjct:    6 AVLVLAVAMVAACGGGVVGVAGAGCNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of DN134787 vs. ExPASy Swiss-Prot
Match: NLT2P_WHEAT (Non-specific lipid-transfer protein 2P OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.681e-11
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 2
Query:  155 CSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 352
            C  +QL+ C SAI S   PS  CC  ++ Q+PC CQY ++P+  ++I +P+AR    +CG   P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQPCFCQYAKDPTYGQYIRSPHARDTLQSCGLAVPHC 67          
The following BLAST results are available for this feature:
BLAST of DN134787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NLTP_VIGUN1.914e-2351.58Probable non-specific lipid-transfer protein AKCS9... [more]
NLTP2_PRUAR3.992e-2158.82Non-specific lipid-transfer protein 2 OS=Prunus ar... [more]
NLTP2_HORVU2.506e-1536.17Probable non-specific lipid-transfer protein OS=Ho... [more]
NLTPX_ORYSI3.387e-1235.56Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTPX_ORYSJ4.424e-1235.56Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2P_WHEAT1.681e-1140.91Non-specific lipid-transfer protein 2P OS=Triticum... [more]
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Properties
Property NameValue
Genbank descriptionwca01c06 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01c06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134787 ID=DN134787; Name=DN134787; organism=Citrus sinensis; type=EST; length=606bp
GCATCACCCATCTAACAAAGCACATTAGTCTCCAGCTTGTAAGTCCATTT
GATTCATACTACATCGAAAAATGGAGGCTTCGCATGTAGCAGCCATTTGC
ACATTGGTGGTTCTTCTTCTGGCAGCTGAAACACAAGTCTCAGTGGCAGT
GACATGCAGCCCAACCCAACTGAGCTCTTGTGTTAGCGCCATCACATCTT
CAACTCCACCATCAAGGCTCTGCTGCAGCAAGATCAAAGAACAGAAGCCT
TGCCTTTGCCAGTACCTTCGAAACCCGAGCCTCAGGAAGTTTATCAACAC
CCCAAATGCCAGGAGAGTTGCTAGCACTTGTGGCACTCCCTTCCCAAAAT
GCTAAATTTCTCTTCTCTCCCATTTCTCTTTGCTGCATTAATCTCGTTTA
ATGCATAGTCTAATATCGAGTGGTGATTGAAGAGAATTATGAGTTAGTAG
TTTAATTGTGCTGTGTTTTATGTTGTTGTTGTTGTGATACTTGTGGAAAC
AATGTTGGGGGTCATGGGTTACATCACATGGCACCAACATCTGTCTTAGC
TAGTGTGTTCTGTTTGTTCCGAAGGCACTACTTATTATTTATAAGGGAAA
TCACTG
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