DN134782

Overview
NameDN134782
Unique NameDN134782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN134782_ssr128 microsatellite DN134782_ssr128:128..139. BLAST: Citrus ESTs to Prunus persica proteins V1
DN134782_ssr88 microsatellite DN134782_ssr88:88..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5667 contig Csv1_Contig5667:1..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN134782 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 347.436 bits (890), Expect = 4.052e-95
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 1 
Query:  142 PAVPLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISLKNSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSXXLWLNIPDYXAPTQLVKP 681
            P+ PLLKDELDIVIPTIRNLDFLE WR FFQ YHLIIVQDGDP+KTIKVPEGFDYELYNRNDINRILGPKASCIS K+SACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLLSPSTPFFFNTLYDPYR+GADFVRGYPFSLREG  TAVS  LWLNIPDY APTQLVKP
Sbjct:   13 PSTPLLKDELDIVIPTIRNLDFLEMWRAFFQPYHLIIVQDGDPTKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAHTAVSHGLWLNIPDYDAPTQLVKP 192
[Close]
BLAST of DN134782 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 347.436 bits (890), Expect = 4.052e-95
Identity = 163/179 (91.06%), Postives = 168/179 (93.85%), Query Frame = 1 
Query:  145 AVPLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISLKNSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSXXLWLNIPDYXAPTQLVKP 681
            A PLLKDELDIVIPTIRNLDFLE WRPFFQ YHLIIVQDGDPSK IKVPEGFDYELYNRNDINRILGPKASCIS K+SACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLL PSTP FFNTLYDPYRDGADFVRGYPFS+REG PTAVS  LWLNIPDY APTQLVKP
Sbjct:    4 ATPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYRDGADFVRGYPFSMREGAPTAVSHGLWLNIPDYDAPTQLVKP 182
[Close]
BLAST of DN134782 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 6.912e-95
Identity = 162/177 (91.53%), Postives = 168/177 (94.92%), Query Frame = 1 
Query:  151 PLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISLKNSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSXXLWLNIPDYXAPTQLVKP 681
            PLLKDELDIVIPTIRNLDFLE WRPFF+ YHLIIVQDGDPSK IKVPEGFDYELYNRNDINRILGPKASCIS K+SACRCFGYMVSKKKY+YTIDDDCFVAKDP+G EINALEQHI+NLLSPSTPFFFNTLYDPYR+G DFVRGYPFSLREGVPTAVS  LWLNIPDY APTQLVKP
Sbjct:    9 PLLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGHEINALEQHIKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKP 185
[Close]
BLAST of DN134782 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.104e-92
Identity = 159/177 (89.83%), Postives = 165/177 (93.22%), Query Frame = 1 
Query:  151 PLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISLKNSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSXXLWLNIPDYXAPTQLVKP 681
            PLLKDELDIVIPTIRNLDFLE WRPFFQ YHLIIVQDGDPSK I VPEGFDYELYNRNDINRILGPKASCIS K+SACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLL PSTP FFNTLYDPYR+GADFVRGYPFS+REG  TAVS  LWLNIPDY APTQLVKP
Sbjct:   10 PLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIINVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYREGADFVRGYPFSMREGAATAVSHGLWLNIPDYDAPTQLVKP 186
The following BLAST results are available for this feature:
BLAST of DN134782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UPTG_MAIZE4.052e-9590.56Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG1_SOLTU4.052e-9591.06Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
UPTG_PEA6.912e-9591.53Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG2_SOLTU1.104e-9289.83Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionwca01c01 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01c01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134782 ID=DN134782; Name=DN134782; organism=Citrus sinensis; type=EST; length=684bp
CGGCCGGGAGTCANCACTCGTCTACGGTCTATCTCTCCTCTCCTCTTGTT
CTTCTTCTTACACAAATCAAAGTCTCTCATTTTTCTTTTTCTTTCTTTCT
TTTTCTGAAACAAAATGGCTGCGGCAGCAACAACAACAAGGCCGGCTGTG
CCGCTGCTGAAAGACGAGCTGGACATCGTGATCCCCACGATCCGAAACTT
GGATTTCTTGGAGCAGTGGAGGCCGTTTTTTCAGGCCTATCATTTGATCA
TCGTTCAGGATGGTGACCCTTCGAAGACCATCAAAGTCCCTGAGGGATTT
GACTACGAGCTCTATAATCGTAACGATATTAACCGGATTCTGGGTCCCAA
GGCTTCTTGCATATCCCTCAAGAACTCTGCCTGCAGGTGCTTTGGCTACA
TGGTGTCCAAGAAGAAGTATGTTTACACCATTGATGACGATTGCTTTGTT
GCTAAAGACCCATCTGGAAAAGAAATTAATGCACTGGAGCAGCACATAAG
GAACCTGCTGAGTCCATCCACCCCATTTTTCTTTAACACTCTGTACGACC
CATACCGTGATGGAGCTGACTTCGTTCGCGGATATCCATTCAGTCTTCGT
GAGGGTGTCCCCACTGCTGTTTCTCANNNCCTCTGGCTCAACATCCCAGA
TTATNNNGCTCCCACCCAGCTTGTCAAGCCTCTT
back to top