DN134770

Overview
NameDN134770
Unique NameDN134770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN134770_ssr117 microsatellite DN134770_ssr117:117..128. BLAST: Citrus ESTs to Prunus persica proteins V1
DN134770_ssr77 microsatellite DN134770_ssr77:77..88. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5667 contig Csv1_Contig5667:12..622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134770 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 306.99 bits (785), Expect = 4.896e-83
Identity = 143/158 (90.51%), Postives = 150/158 (94.94%), Query Frame = 2
Query:  131 PAVPLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISLKNSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVXGYPFSLREGVPT 604
            P+ PLLKDELDIVIPTIRNLDFLE WR FFQ YHLIIVQDGDP+KTIKVPEGFDYELYNRNDINRILGPKASCIS K+SACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLLSPSTPFFFNTLYDPYR+GADFV GYPFSLREG  T
Sbjct:   13 PSTPLLKDELDIVIPTIRNLDFLEMWRAFFQPYHLIIVQDGDPTKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAHT 170          
BLAST of DN134770 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 306.99 bits (785), Expect = 4.896e-83
Identity = 143/157 (91.08%), Postives = 148/157 (94.27%), Query Frame = 2
Query:  134 AVPLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISLKNSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVXGYPFSLREGVPT 604
            A PLLKDELDIVIPTIRNLDFLE WRPFFQ YHLIIVQDGDPSK IKVPEGFDYELYNRNDINRILGPKASCIS K+SACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLL PSTP FFNTLYDPYRDGADFV GYPFS+REG PT
Sbjct:    4 ATPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYRDGADFVRGYPFSMREGAPT 160          
BLAST of DN134770 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 8.352e-83
Identity = 142/155 (91.61%), Postives = 148/155 (95.48%), Query Frame = 2
Query:  140 PLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISLKNSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVXGYPFSLREGVPT 604
            PLLKDELDIVIPTIRNLDFLE WRPFF+ YHLIIVQDGDPSK IKVPEGFDYELYNRNDINRILGPKASCIS K+SACRCFGYMVSKKKY+YTIDDDCFVAKDP+G EINALEQHI+NLLSPSTPFFFNTLYDPYR+G DFV GYPFSLREGVPT
Sbjct:    9 PLLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGHEINALEQHIKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPT 163          
BLAST of DN134770 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.333e-80
Identity = 139/155 (89.68%), Postives = 145/155 (93.55%), Query Frame = 2
Query:  140 PLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISLKNSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVXGYPFSLREGVPT 604
            PLLKDELDIVIPTIRNLDFLE WRPFFQ YHLIIVQDGDPSK I VPEGFDYELYNRNDINRILGPKASCIS K+SACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLL PSTP FFNTLYDPYR+GADFV GYPFS+REG  T
Sbjct:   10 PLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIINVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYREGADFVRGYPFSMREGAAT 164          
The following BLAST results are available for this feature:
BLAST of DN134770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UPTG_MAIZE4.896e-8390.51Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG1_SOLTU4.896e-8391.08Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
UPTG_PEA8.352e-8391.61Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG2_SOLTU1.333e-8089.68Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
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Properties
Property NameValue
Genbank descriptionwca01b01 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01b01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134770 ID=DN134770; Name=DN134770; organism=Citrus sinensis; type=EST; length=611bp
CAGCACTCGTCTACGGTCTATCTCTCCTCTCCTCTTGTTCTTCTTCTTAC
ACAAATCAAAGTCTCTCATTTTTCTTTTTCTTTCTTTCTTTTTCTGAAAC
AAAATGGCTGCGGCAGCAACAACAACAAGGCCGGCTGTGCCGCTGCTGAA
AGACGAGCTGGACATCGTGATCCCCACGATCCGAAACTTGGATTTCTTGG
AGCAGTGGAGGCCGTTTTTTCAGGCCTATCATTTGATCATCGTTCAGGAT
GGTGACCCTTCGAAGACCATCAAAGTCCCTGAGGGATTTGACTACGAGCT
CTATAATCGTAACGATATTAACCGGATTCTGGGTCCCAAGGCTTCTTGCA
TATCCCTCAAGAACTCTGCCTGCAGGTGCTTTGGCTACATGGTGTCCAAG
AAGAAGTATGTTTACACCATTGATGACGATTGCTTTGTTGCTAAAGACCC
ATCTGGAAAAGAAATTAATGCACTGGAGCAGCACATAAGGAACCTGCTGA
GTCCATCCACCCCATTTTTCTTTAACACTCTGTACGACCCATACCGTGAT
GGAGCTGACTTCGTNNNCGGATATCCATTCAGTCTTCGTGAGGGTGTCCC
CACTNNNNNNN
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