CX043904

Overview
NameCX043904
Unique NameCX043904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6651 contig Csv1_Contig6651:366..1042. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043904 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.276e-49
Identity = 92/197 (46.70%), Postives = 127/197 (64.47%), Query Frame = -2
Query:   86 WGTVPEKCAGYVGHYMLGQQYRMDFEVVANEAILYAQSLKLAGDGKNIWVFDIDETSLFNLPYYVKKGFGVKPYNPTLFNEWVNPGKAXXXXXXXXXXXXXXXLGIKIVFLTGRPEDQRNVTEVNLKHAGFDTWEKFILKGSFHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDFLGTNAGNRTFKLPDPMYYI 676
            W T+PE+CA YV  YM+G  Y+M+ + V++EA  YA+S+ L  DG+++W+FD+DET L NLPYY    +G++ ++   F++WV  G A               LG K+  LTGR E  R+VT  NL +AGF  W K IL+GS   G+TA  YKS  R  +  +G+RI+GN GDQWSD LG++   R+FKLP+PMYYI
Sbjct:   58 WKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDGRDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLGFKVFLLTGRSERHRSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKSERRNAMVEEGFRIVGNSGDQWSDLLGSSMSYRSFKLPNPMYYI 254          
BLAST of CX043904 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.409e-44
Identity = 95/197 (48.22%), Postives = 126/197 (63.96%), Query Frame = -2
Query:   86 TVPEKCAGYVGHYMLGQQYRMDFEVVANEAILYAQSLKLAGDGKNIWVFDIDETSLFNLPYYVKKGFGVKPYNPTLFNEWVNPGKAXXXXXXXXXXXXXXXLGIKIVFLTGRPEDQRNVTEVNLKHAGFDTWEKFILKG-SFHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDFLGTNAG-NRTFKLPDPMYYI 670
            T+PE+C      Y+ G+QYR D + V  +A  YA+ L++    K+ +VF ID T L N+PYY K G+GV+ +N TL++EWVN G A               LG KI+FL+GR  D++ VTE NLK AG+ TWEK ILK     S   AV YK++ R+KL  +GY I+G IGDQWSD LG + G +RTFKLP+P+YYI
Sbjct:   59 TIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNPLYYI 253          
BLAST of CX043904 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.579e-43
Identity = 93/196 (47.45%), Postives = 123/196 (62.76%), Query Frame = -2
Query:   86 TVPEKCAGYVGHYMLGQQYRMDFEVVANEAILYAQSLKLAGDGKNIWVFDIDETSLFNLPYYVKKGFGVKPYNPTLFNEWVNPGKAXXXXXXXXXXXXXXXLGIKIVFLTGRPEDQRNVTEVNLKHAGFDTWEKFILKGSFHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDFLGTNAG-NRTFKLPDPMYYI 670
            T+PE+C      Y+ G+Q+R D + V  +A  YA   ++  +  +I++F ID T L N+PYY K G+GV+ +N TL++EWVN G A               LG KIVFL+GR  D+  VTE NLK AGF TWE+ ILK        A+ YKS+ R+ L  +GYRI+G IGDQWSD LG + G +RTFKLP+PMYYI
Sbjct:   60 TIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHTWEQLILKDPHLITPNALSYKSAMRENLLRQGYRIVGIIGDQWSDLLGDHRGESRTFKLPNPMYYI 253          
BLAST of CX043904 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.128e-41
Identity = 92/193 (47.67%), Postives = 122/193 (63.21%), Query Frame = -2
Query:   98 TVPEKCAGYVGHYMLGQQYRMDFEVVANEAILYAQSLKLAGDGKNIWVFDIDETSLFNLPYYVKKGFGVKPYNPTLFNEWVNPGKAXXXXXXXXXXXXXXXLGIKIVFLTGRPEDQRNVTEVNLKHAGFDTWEKFILKG-SFHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDFLGTNAG-NRTFKLPDP 670
            T+PE+C      Y+ G+QYR D + V  +A  YA+ L++    K+ +VF ID T L N+PYY K G+GV+ +N TL++EWVN G A               LG KI+FL+GR  D++ VTE NLK AG+ TWEK ILK     S   AV YK++ R+KL  +GY I+G IGDQWSD LG + G +RTFKLP+P
Sbjct:   56 TIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNP 246          
BLAST of CX043904 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.928e-33
Identity = 80/197 (40.61%), Postives = 111/197 (56.35%), Query Frame = -2
Query:   86 TVPEKCAGYVGHYML-GQQYRMDFEVVANEAILYAQSLKLAGDGKNIWVFDIDETSLFNLPYYVKKGFGVKPYNPTLFNEWVNPG-KAXXXXXXXXXXXXXXXLGIKIVFLTGRPEDQRNVTEVNLKHAGFDTWEKFILKGSFHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDFLGTNAGNRTFKLPDPMYYI 670
            TVP  C  YV  Y++  +QY+ D + V  EA  YA+ L L  D  N+W+FD+D+T L ++PYY K G+G +  +P  +  W+  G                  LGI+ + L+ R +  +NVT  NL+ AG   W+  ILK +  S    VVYKS  RK L  KGY I+GNIGDQW+D +    G R FKLP+P+YY+
Sbjct:   69 TVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIELGIEPIILSDRWKLWKNVTLDNLEAAGVTYWKHLILKPN-GSNLRQVVYKSKVRKSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 263          
BLAST of CX043904 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33
Identity = 78/197 (39.59%), Postives = 109/197 (55.33%), Query Frame = -2
Query:   86 TVPEKCAGYVGHYML-GQQYRMDFEVVANEAILYAQSLKLAGDGKNIWVFDIDETSLFNLPYYVKKGFGVKPYNPTLFNEWVNPGKA-XXXXXXXXXXXXXXXLGIKIVFLTGRPEDQRNVTEVNLKHAGFDTWEKFILKGSFHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDFLGTNAGNRTFKLPDPMYYI 670
            TVP  C  YV  Y++  +QY+ D + V  EA  YA+ L L  D  N+W+FD+D+T L ++PYY K G+G +   P  +  W+  G++                LGI+ + ++ R +    VT  NLK  G   W+  ILK +  S  T VVYKS  R  L  KGY I+GNIGDQW+D +    G R FKLP+P+YY+
Sbjct:   74 TVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLELGIEPIIISDRWKKLSEVTVENLKAVGVTKWKHLILKPN-GSKLTQVVYKSKVRNSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 268          
The following BLAST results are available for this feature:
BLAST of CX043904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC4.276e-4946.70Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSPA_SOYBN5.409e-4448.22Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
VSPB_SOYBN4.579e-4347.45Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
S25K_SOYBN1.128e-4147.67Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSP2_ARATH1.928e-3340.61Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSP1_ARATH9.570e-3339.59Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_14B09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B09-D18-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043904 ID=CX043904; Name=CX043904; organism=Citrus sinensis; type=EST; length=677bp
TTTTTTTTTTTTTTTTTGGGGCACAAATGAAGGCCCTTCCATTATTTATT
CAAAATCCCAAGTAAACATTATTTATTAATTAACCAATGTAATACATTGG
GTCAGGCAGCTTGAACGTCCGATTGCCGGCGTTGGTGCCCAGGAAATCGC
TCCATTGATCACCTATGTTTCCAATAATTCTGTACCCTTTCATCTCAAGC
TTCTTTCTTTCACTTGATTTGTACACCACTGCTGTTTCTCCTGAGTGAAA
TGATCCCTTGAGGATGAACTTCTCCCAGGTGTCGAATCCAGCATGCTTTA
AATTAACTTCTGTAACATTTCTCTGATCTTCTGGTCTTCCCGTGAGGAAT
ACAATCTTAATTCCAAGCAATAATAATTTTTTGTAAAGCTTAAGGCTCTC
TGGCAGCGGTGGGGCTTTTCCGGGGTTCACCCATTCATTAAACAAAGTAG
GGTTGTATGGCTTCACCCCGAATCCCTTCTTAACATAATATGGCAAATTA
AATAGCGAGGTTTCATCTATGTCGAAAACCCAAATGTTCTTGCCGTCCCC
AGCAAGCTTGAGGCTCTGCGCATAAAGAATGGCCTCATTAGCTACCACTT
CAAAGTCCATGCGGTACTGCTGGCCTAACATGTAATGCCCCACGTAACCC
GCACATTTTTCGGGAACAGTCCCCCAT
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