CX043902

Overview
NameCX043902
Unique NameCX043902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3530 contig Csv1_Contig3530:1143..1999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043902 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 444.891 bits (1143), Expect = 2.706e-124
Identity = 219/244 (89.75%), Postives = 233/244 (95.49%), Query Frame = 3
Query:   15 ECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 746
            E ITG+ISK ISTQGMLAVYN+ S + KKEFEKAYSAS+YPCMEILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPL+PFTAGV+ A+MMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+ APIN DLISNF+SDPVHGAI+VCA+LRPT+DISVP  ADFVRPELRQ SN
Sbjct:  338 ESITGVISKTISTQGMLAVYNALSEDGKKEFEKAYSASFYPCMEILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVFVAMMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAELRPTLDISVPAAADFVRPELRQCSN 581          
BLAST of CX043902 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 444.891 bits (1143), Expect = 2.706e-124
Identity = 221/244 (90.57%), Postives = 228/244 (93.44%), Query Frame = 3
Query:   15 ECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 746
            ECITG IS+ ISTQGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+ A IN DLISNF SDPVHGAIEVCAQLRPTVDISVP DADFVRPELRQ SN
Sbjct:  348 ECITGTISRTISTQGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSSN 591          
BLAST of CX043902 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 434.876 bits (1117), Expect = 2.801e-121
Identity = 214/243 (88.07%), Postives = 225/243 (92.59%), Query Frame = 3
Query:   15 ECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGS 743
            E ITGIISK IS +GML VYNS + E KKEF KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGE+VRSTRP  DLGPLHPFTAGVY ALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD DAPIN DLISNF+SDPVHGAIEVCA+LRPTVDISVP +ADFVRPELRQ S
Sbjct:  336 EGITGIISKTISKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGEKVRSTRPENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVPANADFVRPELRQSS 578          
BLAST of CX043902 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 433.721 bits (1114), Expect = 6.239e-121
Identity = 215/241 (89.21%), Postives = 227/241 (94.19%), Query Frame = 3
Query:   15 ECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQ 737
            ECITG+ISK IST+GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGE+VRS RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSYSEIINESVIE+VDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL+QQALVAVDN APIN DLISNFLSDPVH AI VCAQLRP+VDISV  DADFVRPELRQ
Sbjct:  354 ECITGVISKTISTKGMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQ 594          
BLAST of CX043902 vs. ExPASy Swiss-Prot
Match: ILV5_NEUCR (Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa GN=ilv-2 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.091e-11
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 3
Query:  366 LMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDN---DAPINGD 614
            + +AQ E+LR++GHS SE  NE+V E+  SL P + A G+ +M D CSTTAR G+  W P+F     + AL  V N   D+  NGD
Sbjct:  276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTPKF-----KDALKPVFNNLYDSVKNGD 356          
The following BLAST results are available for this feature:
BLAST of CX043902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ILV5_PEA2.706e-12489.75Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_ARATH2.706e-12490.57Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_ORYSJ2.801e-12188.07Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILV5_SPIOL6.239e-12189.21Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_NEUCR3.091e-1145.35Ketol-acid reductoisomerase, mitochondrial OS=Neur... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_14B08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B08-D16-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043902 ID=CX043902; Name=CX043902; organism=Citrus sinensis; type=EST; length=858bp
CAAGAATACCGTGGGAGTGCATAACAGGAATTATATCAAAGATCATCTCA
ACTCAGGGTATGTTGGCTGTCTACAATTCCTTCTCTGGAGAAGACAAAAA
GGAATTCGAGAAAGCTTATAGTGCCTCATATTATCCGTGCATGGAAATCT
TATATGAGTGCTATGAAGATGTGGCCGCTGGCAGTGAGATCCGCAGTGTT
GTCTTGGCTGGACGTCGGTTTTATGAAAAGGAAGGTCTACCAGCTTTCCC
TATGGGAAAAATTGATCAGACTCGCATGTGGAAAGTTGGTGAGCGAGTCC
GATCAACACGTCCAGCAGGTGACTTAGGCCCATTACACCCATTCACAGCA
GGTGTTTATGCGGCTCTGATGATGGCCCAGATTGAGATCCTGAGGAAGAA
AGGGCACTCCTATTCTGAGATCATCAATGAAAGTGTGATTGAGTCAGTGG
ATTCATTGAATCCATTCATGCATGCTCGTGGAGTTTCATTTATGGTGGAC
AACTGCTCTACCACAGCCCGTTTGGGATCAAGGAAATGGGCCCCTCGTTT
TGATTACATCCTGACACAACAAGCCTTGGTGGCAGTGGACAATGATGCCC
CCATCAATGGGGATCTCATCAGCAACTTCCTTTCTGATCCAGTCCATGGA
GCCATTGAAGTCTGTGCTCAGTTGAGACCAACTGTTGACATTTCAGTGCC
ACCAGATGCAGATTTTGTGCGCCCAGAGTTGCGTCAGGGTAGCAATTGAG
TCCTGGTGAGTCCTTAATTTTTTTGTTTCTAGCCCAAAAAATAATTCCCC
CTAGGGATATTGGAGGTAGAGACTTTGCTTAGTCGTGTGAGTTGCCGCTT
ATTTATTT
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