CX043893

Overview
NameCX043893
Unique NameCX043893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043893_ssr199 microsatellite CX043893_ssr199:199..210. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3609 contig Csv1_Contig3609:1..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_PARUW (Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia amoebophila (strain UWE25) GN=rsmA PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.300e-33
Identity = 79/224 (35.27%), Postives = 129/224 (57.59%), Query Frame = 1
Query:  118 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            LN  G FP+K L Q+++++  I  ++  A+ VQ G++VLEIGPG GSLT  +L   A V+A+EKD  +   ++       QL++  ED +   +   + S    R      AKV+AN+P++++T ++ +++    +FS + +++QEE A R+       S+Y    IF+NFYS+P Y F V R  F+P PKVD+A+V  +LK+    P     + FF +  +AF
Sbjct:   13 LNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVVAVEKDFVLARELKRFQTPSKQLEIFCEDILMFSVEEELQS----RLRDDQKAKVIANLPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMTALP-GQSDYSSFTIFLNFYSKPRYGFTVSRNCFYPAPKVDSAIVVLELKEP---PPNIDAQVFFKITRTAF 228          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_MOOTA (Ribosomal RNA small subunit methyltransferase A OS=Moorella thermoacetica (strain ATCC 39073) GN=rsmA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.452e-28
Identity = 76/229 (33.19%), Postives = 123/229 (53.71%), Query Frame = 1
Query:  106 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR-LVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            T+  +  KG  PRKS GQ++++++ I  ++A AA V  GD V+EIGPG G+LT  L      V+AIE D+ +   + E  A  D ++++  D +K      +  +    +      KVVAN+P+ I+T ++  LL      +E+VL++Q E   R L  P     +Y  +++ V +Y+EP    KVPRT F+P+P+VD+ V+    +       V     FF +V +AF
Sbjct:   10 TLALVREKGLVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQELAARAGLVIAIEIDRELFAALEETLAGRDNVRLVAGDALKVDFDRLVAGILGTGEGRLPTYKVVANLPYYITTPILMHLLTSRFRIAELVLMVQAEVGYRMLARPG--GKDYGALSVVVQYYTEPAVVLKVPRTVFYPRPEVDSLVLKLTCR-TRPVVQVEDEDFFFRVVRAAF 235          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BACLD (Ribosomal RNA small subunit methyltransferase A OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rsmA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.121e-28
Identity = 78/229 (34.06%), Postives = 128/229 (55.90%), Query Frame = 1
Query:  106 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            T + LN  G   +KSLGQ++++++ I D++   A V E   V+EIGPG G+LT  L      V A E DQ ++ ++ +  +  D + V+ +D +K  +R+ M   F+          VVAN+P+ ++T +I +LL        +V++LQ+E A R+  +PS  + EY  ++I V FY+E +    VP+T F PQP VD+AV+   L++     AV     FF +V ++F
Sbjct:   11 TKEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKRAKKVTAFEIDQRLLPILEDTLSPYDNVTVIHQDVLKADVRAVMDEQFQ----DCDEVMVVANLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAKPS--SKEYGSLSIAVQFYTEAKTVMNVPKTVFVPQPNVDSAVIRLTLRKEPAV-AVQDAAFFFQVVKASF 232          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_ALKOO (Ribosomal RNA small subunit methyltransferase A OS=Alkaliphilus oremlandii (strain OhILAs) GN=rsmA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.121e-28
Identity = 70/217 (32.26%), Postives = 122/217 (56.22%), Query Frame = 1
Query:  145 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAF 789
            KSLGQ+++++  I D +   A V EGD ++E+GPG GSLT  +     +VLA+E D+ ++ +++E   +   ++V+ ED +K  +   +   F  R       KV+AN+P+ ++T +I + L        + +++Q+E A R+ +    T +Y  ++I V +YS P+   KVP + F PQPKV++ V+   +    D P V+  +   FFS+V  AF
Sbjct:   23 KSLGQNFLIDQNILDNIVDGANVSEGDCIIEVGPGIGSLTQNIAERADSVLAVEIDKTLIPILKETLGAYPNVEVINEDVLKLDLHKLIEEKFPGRN-----VKVIANLPYYVTTPIIMKFLEEKVPVKSLTIMIQKEVADRM-QAGPGTKDYGALSIAVQYYSNPKILLKVPPSVFIPQPKVESTVIRLDI---LDTPKVSVEREDLFFSLVKDAF 230          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRR6 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rsmA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.534e-27
Identity = 74/231 (32.03%), Postives = 122/231 (52.81%), Query Frame = 1
Query:   94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSA 786
            DY  T   L   G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L    A V+A E D  +V ++ +     D + V+ ED +K  +  H+    +  K+ +   KVVAN+P+ I+T ++  L+  G  FSE V+++Q+E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+A++  K+ +  +       ++FF  VS A
Sbjct:    5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPIKVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAIL--KMVRRPEPAVAVEDENFFFKVSKA 228          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRP2 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rsmA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.534e-27
Identity = 74/231 (32.03%), Postives = 122/231 (52.81%), Query Frame = 1
Query:   94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSA 786
            DY  T   L   G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L    A V+A E D  +V ++ +     D + V+ ED +K  +  H+    +  K+ +   KVVAN+P+ I+T ++  L+  G  FSE V+++Q+E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+A++  K+ +  +       ++FF  VS A
Sbjct:    5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPIKVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAIL--KMVRRPEPAVAVEDENFFFKVSKA 228          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SYMTH (Ribosomal RNA small subunit methyltransferase A OS=Symbiobacterium thermophilum GN=rsmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.028e-27
Identity = 74/229 (32.31%), Postives = 133/229 (58.08%), Query Frame = 1
Query:  109 IKALNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            +KAL ++ G  P+  LGQ+++++  + D + +AA ++  D+VLEIGPG G+LT  L      V+ +E D+ +V ++ +    + D ++V+  D  +  +      L   R +    AKVVAN+P+ I+T ++ +LL      S VV+++Q+E A R+V P   +  Y  +++ V +Y+EP    +V R +F PQP+VD+AVV+ + ++    P     ++FF +V +AF
Sbjct:    9 LKALMAQYGLRPQHRLGQNFLIDGRVLDGIVSAAGLEPTDVVLEIGPGLGTLTQRLAAKAGRVVCVELDRGLVQVLHDTVQKAYDNVEVIHGDAGRIDLH----KLLGERLAPGQKAKVVANLPYYITTPLVMRLLEEELPLSHVVVMVQKEVADRMVSPP-GSKAYGALSVAVQYYTEPRIVLRVSRASFMPQPEVDSAVVSLRYRERP--PVDAPPEAFFRVVRAAF 230          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_HALOH (Ribosomal RNA small subunit methyltransferase A OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rsmA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.873e-27
Identity = 74/215 (34.42%), Postives = 121/215 (56.28%), Query Frame = 1
Query:  145 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            K LGQ+++++  I D++   A +   DIV+EIGPG GSLT  ++     V A EKD+ +V ++RE F   + L+V+ +D ++   +      F+ R  S    KV+AN+P+ I+T VI  LL     FS +VL++Q+E A R+   +  + +Y  +++ V +Y E E   KVP T F P+P+V ++++  K      Y  V +   FF MV + F
Sbjct:   24 KGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGRVFAFEKDKRLVKVLRELFNGYNHLEVIGQDVLEVDWK----HFFDSRGISDRSVKVLANLPYYITTPVIMGLLESNITFSLMVLMVQKEVADRMA-AAPGSKDYGALSVAVQYYGEVEIFHKVPPTVFIPRPRVYSSIIKIKPHSEPVY-RVKNEGFFFKMVRAIF 232          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_CLOD6 (Ribosomal RNA small subunit methyltransferase A OS=Clostridium difficile (strain 630) GN=rsmA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.873e-27
Identity = 69/231 (29.87%), Postives = 129/231 (55.84%), Query Frame = 1
Query:  100 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            H   K +  K  F   KSLGQ+++++S I D++ + A +  GD ++E+GPG G+LT  +      V+AIE D++++ ++++  + +D  +V+ +D +K  I+        + K + G  K+VAN+P+ I+T ++ + L      +++V+++Q+E A R+      T +Y  ++I V +Y + E   K PR  F PQP VD+ V+   ++    Y  V +   FF  V ++F
Sbjct:    7 HNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMGKIAEKVVAIEIDRNLIPILKDTLSDLDNTEVVNQDILKVDIQE-----LVKDKLNGGPVKLVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRM-NAIPGTKDYGALSIAVQYYCDTEIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYD-VHNEDIFFKTVKASF 230          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRZP (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain P1031) GN=rsmA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.028e-26
Identity = 73/232 (31.47%), Postives = 121/232 (52.16%), Query Frame = 1
Query:   94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            DY  T   L   G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L    A V+A E D  +V ++ +     D + V+ ED +K  +  H+    +  K+     KVVAN+P+ I+T ++  L+  G  FSE V+++Q+E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+A++   +++     AV     FF +  ++F
Sbjct:    5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPIKVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPVPAVAVEDENFFFKVSKASF 230          
The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_PARUW3.300e-3335.27Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_MOOTA5.452e-2833.19Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACLD7.121e-2834.06Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ALKOO7.121e-2832.26Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRR63.534e-2732.03Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRP23.534e-2732.03Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SYMTH6.028e-2732.31Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_HALOH7.873e-2734.42Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CLOD67.873e-2729.87Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRZP1.028e-2631.47Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bp
CCGAAACCAACACGCCCGGCCCACAGTAGCATCGCCGGCGTACAAAAAGG
AGCAGCATCTGCATGCATTGTTTGCGCAAGAAGCCAAGACGACGACTATC
ACGCAACTATTAAAGCCCTCAACTCCAAAGGCCGTTTCCCCAGAAAATCC
CTCGGACAGCATTACATGTTAAATTCTGAAATAAACGATCAGCTTGCAGC
CGCCGCCGCCGTTCAAGAAGGTGACATCGTGTTAGAGATTGGGCCTGGAA
CCGGTTCTTTGACTAATGTTCTGTTAAATGCCGGCGCCACTGTCCTAGCC
ATCGAGAAGGATCAGCATATGGTTGGTCTTGTGAGAGAAAGATTCGCAAG
TATAGACCAGCTCAAGGTTCTGCAAGAGGATTTTGTCAAATGTCACATCC
GCTCCCATATGTTGTCGTTGTTTGAAAGAAGAAAGTCTAGCTCAGGGTTT
GCTAAGGTGGTTGCCAATATACCCTTTAATATCAGTACAGATGTAATCAA
GCAACTTCTTCCTATGGGTGACATTTTTTCTGAAGTTGTTCTCTTACTTC
AGGAAGAAACAGCTTTGCGCTTGGTAGAACCTTCCTTGCGTACATCTGAG
TACCGACCCATCAATATCTTTGTCAATTTTTATTCAGAGCCTGAATACAA
ATTCAAAGTCCCAAGGACAAACTTTTTCCCTCAGCCCAAAGTTGATGCAG
CTGTTGTTACATTCAAGCTGAAGCAAGCTACAGATTATCCTGCAGTTACC
TCCACAAAGAGCTTCTTTTCAATGGTCAGTTCTGCATTTAA
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