CX043891

Overview
NameCX043891
Unique NameCX043891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2114 contig Csv1_Contig2114:86..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043891 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.866e-28
Identity = 67/104 (64.42%), Postives = 78/104 (75.00%), Query Frame = 1
Query:   13 FGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKV---LVPASEQNGRNG----KKTEIETQREVTTYWRKFVSDRKANNKNKIC 303
            FGWIVPAYTMP +AQHITVLRVVIREDFSRTLAERLV DI KVLHELD+LP++V   L  A EQ   NG    KKT+ E Q E+ T W+KFV ++K    N++C
Sbjct:  398 FGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLAVAEEQAAANGSEVHKKTDSEVQLEMITAWKKFVEEKK-KKTNRVC 500          
BLAST of CX043891 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.695e-27
Identity = 67/99 (67.68%), Postives = 73/99 (73.74%), Query Frame = 1
Query:   13 FGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVLVPASEQNGRNG-------KKTEIETQREVTTYWRKFVSDRKANN 288
            FGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLV DI+KVLHELD+LPSK+    S++ G  G       KK E E   EV   WRKFV +RK  N
Sbjct:  397 FGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVADISKVLHELDTLPSKI----SKKMGIEGIAENVKEKKMEKEILMEVIVGWRKFVKERKKMN 491          
BLAST of CX043891 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.747e-26
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 1
Query:   13 FGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVL------VPASEQNGRN----GKKTEIETQREVTTYWRKFVSDRK 279
            +GWIVPAYTMP +AQHITVLRVVIREDFSRTLAERLV+DI KV+ ELD LPS+V+         SE N  N     KK++I+ QR++ T W+KFV+DRK
Sbjct:  398 YGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKISLGQEKSESNSDNLMVTVKKSDIDKQRDIITGWKKFVADRK 496          
BLAST of CX043891 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.527e-19
Identity = 51/99 (51.52%), Postives = 62/99 (62.63%), Query Frame = 1
Query:   13 FGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSK-----VLVPASEQNGRNG------KKTEIETQREVTTYWRKFVSDR 276
            FGWIVPAYTMP DA+HI VLRVVIREDFS +LAERLV DI K+L ELD+ P +     V V A E     G          +ETQ+++  +WRK    +
Sbjct:  399 FGWIVPAYTMPPDAEHIAVLRVVIREDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRVTAEEVRDDKGDGLHHFHMDTVETQKDIIKHWRKIAGKK 497          
The following BLAST results are available for this feature:
BLAST of CX043891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DCE_PETHY1.866e-2864.42Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE2_ARATH2.695e-2767.68Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE1_ARATH1.747e-2662.63Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE_SOLLC3.527e-1951.52Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14B01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B01-D2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043891 ID=CX043891; Name=CX043891; organism=Citrus sinensis; type=EST; length=469bp
GCCCCCCCCGCTTTTGGTTGGATTGTGCCAGCGTACACCATGCCCGCTGA
CGCTCAGCACATCACCGTGCTACGTGTCGTCATCAGGGAAGACTTCTCTC
GCACACTTGCCGAGCGCCTTGTACTCGACATCACAAAAGTGCTTCATGAG
CTTGATTCGCTTCCTTCAAAAGTGCTTGTACCTGCTTCTGAACAGAATGG
AAGGAATGGAAAGAAGACTGAAATTGAGACTCAAAGGGAAGTCACTACTT
ACTGGAGGAAATTCGTCTCCGATAGGAAAGCTAATAACAAGAATAAAATT
TGTTAAGACACCCCCCCCCCCCCCTTTCATTTTTTTGAATTTTAGTATTT
TACATTTTATTATTGGCATATGAAACTGCTGGCGTGTAGCATGTTGACGA
TTTTGATTATTTGTATTTTTTTCTGAAACCTATTGTTAACTGTTAAGACC
ATTTACTAAATCAAAGCCT
back to top