CX043889

Overview
NameCX043889
Unique NameCX043889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6033 contig Csv1_Contig6033:440..1224. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043889 vs. ExPASy Swiss-Prot
Match: GP107_HUMAN (Protein GPR107 OS=Homo sapiens GN=GPR107 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.865e-31
Identity = 77/213 (36.15%), Postives = 115/213 (53.99%), Query Frame = 2
Query:  161 FTFNNLNGKSEYNTIYSENDADQ---YTLVFANCLQQLKVSMDVRSAMYNLEGRSNNRD-YLSAGKTILPRIYFLFSLIYFTLAGLWIHVLYRKRLTVFRIHFFMXXXXXXXXXXXXCEAEDKSYIKRTG-SAHGWDVLFYMFSFLKGITLFTLIVLIGTGWSFLKPYLQDKEKKVLMIVIPLQVVANIAQVVIDETGPYGQDWITWKQVFLL 784
            F+ +N  G   +   ++ +  DQ   Y+L F  CL + ++  D  +   ++E    N D YLSAG+  LP++Y   +  +F    +WIH+L ++R  VF+IH+ M              A D  YI   G    GW V++Y+   LKG  LF  I LIGTGW+F+K  L DK+KK+ MIVIPLQV+AN+A ++I+ T     ++  WK    L
Sbjct:  195 FSVHNNGGAVSFQFFFNISTDDQEGLYSLYFHKCLGK-ELPSDKFTFSLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFL 406          
BLAST of CX043889 vs. ExPASy Swiss-Prot
Match: GP107_MOUSE (Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.672e-29
Identity = 75/213 (35.21%), Postives = 110/213 (51.64%), Query Frame = 2
Query:  161 FTFNNLNGKSEYNTIYSENDADQ---YTLVFANCLQQLKVSMDVRSAMYNLE-GRSNNRDYLSAGKTILPRIYFLFSLIYFTLAGLWIHVLYRKRLTVFRIHFFMXXXXXXXXXXXXCEAEDKSYIKRTG-SAHGWDVLFYMFSFLKGITLFTLIVLIGTGWSFLKPYLQDKEKKVLMIVIPLQVVANIAQVVIDETGPYGQDWITWKQVFLL 784
            F+ +  +G   +   ++ +  DQ   Y+L F  C        +  S   N+     N   YLSAG+  LP++Y   +L +F    +WIH+L ++R  VF+IH+ M              A D  YI   G    GW V++Y+   LKG  LF  I LIGTGW+F+K  L DK+KK+ MIVIPLQV+AN+A ++I+ T     ++  WK    L
Sbjct:  193 FSIHKNDGVVSFQFFFNISTDDQEGLYSLYFHKCSGNNVKPGEQASFSLNIAITEKNPNSYLSAGEIPLPKLYVSMALFFFLSGTIWIHILRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFL 405          
BLAST of CX043889 vs. ExPASy Swiss-Prot
Match: GP108_HUMAN (Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.712e-24
Identity = 70/219 (31.96%), Postives = 110/219 (50.23%), Query Frame = 2
Query:  143 DLIKHVFTFNNLNGKSEYNTIYSENDADQYTLVFANCLQQL---KVSMDVRSAMYNLEGRSNNRD-YLSAGKTILPRIYFLFSLIYFTLAGLWIHVLYRKRLTVFRIHFFMXXXXXXXXXXXXCEAEDKSYIKRTGSA-HGWDVLFYMFSFLKGITLFTLIVLIGTGWSFLKPYLQDKEKKVLMIVIPLQVVANIAQVVIDETGPYGQDWITWKQVFLL 784
            DL+  +   NN    S +  I S+ +  QY+L F NC   +   +   D+   +     R  N D +LSA +  L ++Y + S  +      W+ +L R   +VF+IH+ M              + +  +I   G    G  V++Y+   LKG  LF  I LIG+GW+F+K  L DKEKKV  IVIP+QV+AN+A ++I+       D++ WK++  L
Sbjct:  191 DLVLGLSHLNNSYNFSFHVVIGSQAEEGQYSLNFHNCNNSVPGKEHPFDITVMI-----REKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALAFTKSISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVLSDKEKKVFGIVIPMQVLANVAYIIIESREEGASDYVLWKEILFL 404          
BLAST of CX043889 vs. ExPASy Swiss-Prot
Match: GP108_RAT (Protein GPR108 OS=Rattus norvegicus GN=Gpr108 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.886e-23
Identity = 71/222 (31.98%), Postives = 107/222 (48.20%), Query Frame = 2
Query:  137 QSDLIKHVFTFNNLNGKSEYNTIYSENDADQYTLVFANCL-----QQLKVSMDVRSAMYNLEGRSNNRDYLSAGKTILPRIYFLFSLIYFTLAGLWIHVLYRKRLTVFRIHFFMXXXXXXXXXXXXCEAEDKSYIKRTGSA-HGWDVLFYMFSFLKGITLFTLIVLIGTGWSFLKPYLQDKEKKVLMIVIPLQVVANIAQVVIDETGPYGQDWITWKQVFLL 784
            + DL+  +   N+    S +  I S  +  QY+L F NC      Q+    + V     N EG      +LSA +  L ++Y + S  +      W+ VL +   +VF+IH+ M              + +  +I   G    G  V+ Y+   LKG  LF  I LIG+GW+F+K  L DKEKK+  IVIPLQV+AN+A +VI+       D+  WK++  L
Sbjct:  222 EKDLVLGLGHLNDSYNFSFHIVIGSRAEEGQYSLNFHNCYNTIPGQEQPFDLTVMIREKNPEG------FLSAAEIPLFKLYLIMSACFLAAGIFWVSVLCKNTYSVFKIHWLMAALAFTKSVSLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWAFVKYMLSDKEKKIFGIVIPLQVLANVAYIVIESREEGASDYGLWKEILFL 437          
BLAST of CX043889 vs. ExPASy Swiss-Prot
Match: GP108_MOUSE (Protein GPR108 OS=Mus musculus GN=Gpr108 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.825e-22
Identity = 70/222 (31.53%), Postives = 106/222 (47.75%), Query Frame = 2
Query:  137 QSDLIKHVFTFNNLNGKSEYNTIYSENDADQYTLVFANCL-----QQLKVSMDVRSAMYNLEGRSNNRDYLSAGKTILPRIYFLFSLIYFTLAGLWIHVLYRKRLTVFRIHFFMXXXXXXXXXXXXCEAEDKSYIKRTGSA-HGWDVLFYMFSFLKGITLFTLIVLIGTGWSFLKPYLQDKEKKVLMIVIPLQVVANIAQVVIDETGPYGQDWITWKQVFLL 784
            + D +  +   N+    S +  I S  +  QY+L F NC      Q+    + V     N EG      +LSA +  L ++Y + S  +      W+ VL +   +VF+IH+ M              + +  +I   G    G  V+ Y+   LKG  LF  I LIG+GW+F+K  L DKEKK+  IVIPLQV+AN+A +VI+       D+  WK++  L
Sbjct:  215 EKDQVLGLGHLNDSYNFSFHIVISSRAEEGQYSLNFHNCHNSIPGQEQPFDLTVMIREKNPEG------FLSAAEIPLFKLYLIMSACFLAADIFWVSVLCKNTYSVFKIHWLMAALAFTKSVSLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWAFVKYMLSDKEKKIFGIVIPLQVLANVAYIVIESREEGASDYGLWKEILFL 430          
BLAST of CX043889 vs. ExPASy Swiss-Prot
Match: GP108_BOVIN (Protein GPR108 OS=Bos taurus GN=GPR108 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.283e-21
Identity = 68/218 (31.19%), Postives = 104/218 (47.71%), Query Frame = 2
Query:  143 DLIKHVFTFNNLNGKSEYNTIYSENDADQYTLVFANCLQQLKVSMDVRSAMYNLE---GRSNNRDYLSAGKTILPRIYFLFSLIYFTLAGLWIHVLYRKRLTVFRIHFFMXXXXXXXXXXXXCEAEDKSYIKRTGSA-HGWDVLFYMFSFLKGITLFTLIVLIGTGWSFLKPYLQDKEKKVLMIVIPLQVVANIAQVVIDETGPYGQDWITWKQVFLL 784
            +L+  +   NN    S +  I S  +  QY L F NC      S+  R   +++       N   YLSA +  L ++Y + S  +      W+ +L +    VF+IH+ M              + +  +I   G    G  V+ Y+   LKG  LF  I LIG+GW+F+K  L DKEKK+  IVIPLQV+AN+A +V++       D+  WK++  L
Sbjct:  196 ELVLGLGHLNNSYNFSFHVVIGSRAEEGQYNLNFHNCDN----SVPGREQPFDITVMIREKNPEGYLSAAEIPLFKLYMVMSACFLGAGIFWVSILCKNTYNVFKIHWLMAALTFTKSVSLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWAFVKYVLSDKEKKIFGIVIPLQVLANVAYIVMESREEGASDYGIWKEILFL 409          
The following BLAST results are available for this feature:
BLAST of CX043889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GP107_HUMAN8.865e-3136.15Protein GPR107 OS=Homo sapiens GN=GPR107 PE=2 SV=1[more]
GP107_MOUSE1.672e-2935.21Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2[more]
GP108_HUMAN4.712e-2431.96Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=2[more]
GP108_RAT8.886e-2331.98Protein GPR108 OS=Rattus norvegicus GN=Gpr108 PE=2... [more]
GP108_MOUSE9.825e-2231.53Protein GPR108 OS=Mus musculus GN=Gpr108 PE=2 SV=1[more]
GP108_BOVIN1.283e-2131.19Protein GPR108 OS=Bos taurus GN=GPR108 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_14A12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A12-B24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043889 ID=CX043889; Name=CX043889; organism=Citrus sinensis; type=EST; length=785bp
CTCACGTTTCCAAATCTCCCTTTCAAAATCCAACCCGGACCTCGACTTCT
CCAAGGTCGGATTCTTCCTCTGCACTCGCGACTCATGGCTCCACGTGCTC
CAACAGCTCGAAGACGGAGAGATCACGTGCGCTCTCCAGTCCGATCTAAT
CAAACACGTCTTCACCTTCAACAACCTCAACGGCAAATCCGAGTACAACA
CCATCTATTCCGAGAACGACGCCGATCAATACACGCTCGTTTTCGCCAAT
TGTCTCCAGCAACTCAAAGTCTCCATGGACGTCAGATCCGCCATGTACAA
TCTCGAAGGAAGATCCAACAATCGCGATTACCTCTCCGCCGGCAAGACGA
TTCTGCCTAGGATCTATTTCCTCTTCTCCCTAATCTACTTCACCCTCGCC
GGTCTCTGGATCCACGTCCTTTACAGGAAACGACTCACTGTTTTCCGCAT
CCACTTTTTCATGCTCGCCGTCGTGGTCCTCAAAGCGGTGAACCTCTTGT
GCGAGGCCGAAGATAAATCGTACATCAAACGCACCGGCAGCGCCCACGGC
TGGGACGTCTTGTTTTACATGTTCAGTTTCCTGAAAGGAATCACGCTTTT
CACGTTGATCGTTTTGATCGGTACCGGATGGTCCTTTTTGAAGCCGTATC
TGCAGGATAAAGAGAAGAAAGTCCTGATGATCGTGATCCCACTCCAGGTC
GTTGCTAATATTGCGCAGGTGGTTATTGATGAAACGGGCCCGTATGGTCA
GGATTGGATCACGTGGAAGCAAGTATTCTTGCTTG
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