DC900412

Overview
NameDC900412
Unique NameDC900412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length964
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12156 contig Csv1_Contig12156:755..1717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900412 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.152e-20
Identity = 72/181 (39.78%), Postives = 97/181 (53.59%), Query Frame = 2
Query:    2 NNSDQDYYNNVSILEEKPQV--NQYGYLGSFPNDGELGFKPFVPTADDTPLYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAF-DNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGG 535
            NNS  + + ++S +EEKPQ+  NQ+G   SF   G  G++           YF+SDQGSNSFDCS+FGW +  PKTPEISS+L      +E+ FV+   N  KKLK NS+             SD+L+A+ DN +   P+       EA L A   G  TQ+  N + LWS D+    L G
Sbjct:  230 NNSFDNSFGDMSFMEEKPQMYNNQFGLTNSFDAGGNNGYQ-----------YFSSDQGSNSFDCSEFGWSDHGPKTPEISSMLVNN---NEASFVEE-TNAAKKLKPNSDE------------SDDLMAYLDNALWDTPLEV-----EAMLGADA-GAVTQEEENPVELWSLDEINFMLEG 377          
BLAST of DC900412 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.274e-19
Identity = 69/176 (39.20%), Postives = 88/176 (50.00%), Query Frame = 2
Query:   23 YNNVSILEEKPQVNQYGYLGSFPNDGELGFKPFVPTADDTPLYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGD--NTQDGG-NLMNLWSFDDFPSTLGGVY 541
            + N+  +EEK QV+         N+ + G    V    +   YF+SDQGSNSFDCS+FGW +QAP TP+ISS   A    + S      ANP KKLKS                    + F+        PY    W+ASLD FLN D   TQD G N M+LWS D+  S +GGV+
Sbjct:  221 FENMCFMEEKHQVSNN-------NNNQFGMTNSVDAGCNGYQYFSSDQGSNSFDCSEFGWSDQAPITPDISS---AVINNNNSALFFEEANPAKKLKS--------------------MDFET-------PYNNTEWDASLD-FLNEDAVTTQDNGANPMDLWSIDEIHSMIGGVF 358          
BLAST of DC900412 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.937e-16
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 2
Query:  116 PFVPTADDT-PL---YFNSDQGSNSFDCSDFGWGEQAPKTPEISSV--LEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFP 520
            PFVP  +   P+     NSDQGSNSF CSDFGW E   KTP+I+S+  +    EVDES F+ +  NPM           PV +N+   L D     +  ++FL     +G+ + S+D+ LN D +QD  + M+LWSFDD P
Sbjct:  238 PFVPAMNSAAPIEDPIINSDQGSNSFGCSDFGW-ENDTKTPDITSIAPISTIAEVDESAFIKSSTNPM---------VPPVMENSAVDLPD----LEPYMRFL---LDDGAGD-SIDSLLNLDGSQDVVSNMDLWSFDDMP 360          
The following BLAST results are available for this feature:
BLAST of DC900412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RAP22_ARATH1.152e-2039.78Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH1.274e-1939.20Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ2.937e-1641.13Ethylene-responsive transcription factor 1 OS=Oryz... [more]
back to top
Properties
Property NameValue
Genbank descriptionDC900412 VSS Citrus sinensis cDNA clone VS28989 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900412 ID=DC900412; Name=DC900412; organism=Citrus sinensis; type=EST; length=964bp
GAACAACTCCGATCAGGATTACTACAACAATGTGAGTATTCTGGAGGAGA
AACCACAAGTGAATCAGTATGGATATTTGGGCTCCTTCCCTAATGATGGA
GAACTAGGATTCAAACCCTTTGTGCCAACAGCTGATGATACTCCTTTGTA
CTTCAACTCTGACCAAGGCAGTAACTCCTTTGATTGTTCTGACTTTGGCT
GGGGAGAACAGGCACCAAAGACTCCTGAAATCTCATCTGTTTTGGAAGCT
ACCCCTGAAGTTGATGAATCTCAGTTTGTGGATGCGGTTGCAAACCCGAT
GAAGAAGCTGAAATCTAACTCTGAGAATGCTGTGCCTGTTCAGGATAACA
ATGGAAAGTCTCTGTCTGATGAGCTTTTGGCTTTTGACAATCAGGTGAAG
TTCTTGCCAATGCCGTATCCTGAAGGAAGCTGGGAGGCCTCCCTCGATGC
CTTCCTCAATGGTGACAACACTCAGGATGGTGGAAACTTGATGAACCTTT
GGAGCTTTGATGACTTCCCTTCTACCCTAGGGGGAGTGTATTGAGCAAAC
TTTTAATGTGCTTGCTAGTTTTGTAAATAAGGCTATATCTTTGAGGACTG
GTTGTCTATCTGTGTTGGAGATGCAGTGCTTAATTGTTGGACATGCTTAA
GCCAAGCCATGTGTGGAGATTGCTCTCAGGAGCTTTCAGTAGATTCTTAG
TATATAGGTGTTTAGGTTCCTTTTAACCTATGAGACTTGAAGCATTTTGA
ACATTTTGCAATCTAGTGACTGTATGGATGATTATGTGTGATTTGTGATC
AAAAACTGAACCGGATGATTGTAATCCTTGTTAATTTGCTTCTTTCATGG
TCTTTGTGATTGCCTAACCACAGGCCGCCAATATGTTATTATCTATTTAT
TCTCTTCTGTGGATAGTCTTTGAGCTTGTCGGCTTGAAGATGGAAACCGG
ATGAGCATTCATCT
back to top