CX043830

Overview
NameCX043830
Unique NameCX043830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13289 contig Csv1_Contig13289:966..1826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043830 vs. ExPASy Swiss-Prot
Match: VILI2_ARATH (Villin-2 OS=Arabidopsis thaliana GN=VLN2 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.721e-31
Identity = 76/145 (52.41%), Postives = 98/145 (67.59%), Query Frame = -1
Query:  433 AEKKRSPDTSPTR--TSGSPTAETSLSSEPKXXXXXXXXXXXEQVGDVKETEEVVPVSESNGDDSETKQVTE-QDENGSETSRSTFSYDQLKARSDNPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 858
            AE K+SPDTSPTR  TS +P  +  L+                   + KE EEV P +    D++E KQ TE Q ++  + S +TF+Y+QL+A+S+NPVTGIDFKRREAYLS+EEFQ+VFG+ KEAF  LP+WKQD+ KKKFDLF
Sbjct:  841 AENKKSPDTSPTRRSTSSNPADDIPLTEAKDEEEASEVAGL-----EAKEEEEVSPAA----DETEAKQETEEQGDSEIQPSGATFTYEQLRAKSENPVTGIDFKRREAYLSEEEFQSVFGIEKEAFNNLPRWKQDLLKKKFDLF 976          
BLAST of CX043830 vs. ExPASy Swiss-Prot
Match: VILI3_ARATH (Villin-3 OS=Arabidopsis thaliana GN=VLN3 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.929e-30
Identity = 72/143 (50.35%), Postives = 100/143 (69.93%), Query Frame = -1
Query:  433 SAEKKRSPDTSPTRTSGSPTAETSLSSEPKXXXXXXXXXXXEQVGDVKETEEVVPVSESNGDDSETKQVTEQDENGSETSRSTFSYDQLKARSDNPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 861
            +AEKK+SPDTSP+  + +   ETS S               E+  + KE EEV P +E++ ++++ KQ    D++  ET+  TF+Y++L+A+S+ PVTGIDFKRREAYLS+ EF+TVFGM KE+FYKLP WKQD+ KKKF+LF
Sbjct:  840 TAEKKKSPDTSPS--AEAKDEETSFSE----------VEATEEATEAKEEEEVSPAAEASAEEAKPKQ----DDSEVETTGVTFTYERLQAKSEKPVTGIDFKRREAYLSEVEFKTVFGMEKESFYKLPGWKQDLLKKKFNLF 966          
BLAST of CX043830 vs. ExPASy Swiss-Prot
Match: VILI4_ARATH (Villin-4 OS=Arabidopsis thaliana GN=VLN4 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.954e-15
Identity = 48/109 (44.04%), Postives = 59/109 (54.13%), Query Frame = -1
Query:  433 PVSESNGDDSETKQVTEQDENGSETSR--------------------STFSYDQLKARSDNPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 699
            P  ESN  + E K+  +++E GS +SR                        YD+LK  S +PV+ ID  RREAYLS EEF+  FGM KEAFYKLPKWKQ+  K    LF
Sbjct:  867 PAPESNSKEQEEKKENDKEE-GSMSSRIESLTIQEDAKEGVEDEEDLPAHPYDRLKTTSTDPVSDIDVTRREAYLSSEEFKEKFGMTKEAFYKLPKWKQNKFKMAVQLF 974          
BLAST of CX043830 vs. ExPASy Swiss-Prot
Match: VILI1_ARATH (Villin-1 OS=Arabidopsis thaliana GN=VLN1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.723e-13
Identity = 39/87 (44.83%), Postives = 50/87 (57.47%), Query Frame = -1
Query:  433 SESNGDDSETKQVTEQDENGSETSRSTFSYDQLKARSDNPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 693
            S S  D S+ K     + + S      +SY+QL+  S  PVT ID  RREAYL+++EF+  FGM K  FY LPKWKQ+  K    LF
Sbjct:  823 SSSKSDISKQKPRVGINSDLSSLESLAYSYEQLRVDSQKPVTDIDATRREAYLTEKEFEERFGMAKSEFYALPKWKQNKLKISLHLF 909          
The following BLAST results are available for this feature:
BLAST of CX043830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
VILI2_ARATH2.721e-3152.41Villin-2 OS=Arabidopsis thaliana GN=VLN2 PE=1 SV=2[more]
VILI3_ARATH3.929e-3050.35Villin-3 OS=Arabidopsis thaliana GN=VLN3 PE=1 SV=1[more]
VILI4_ARATH7.954e-1544.04Villin-4 OS=Arabidopsis thaliana GN=VLN4 PE=1 SV=1[more]
VILI1_ARATH9.723e-1344.83Villin-1 OS=Arabidopsis thaliana GN=VLN1 PE=2 SV=2[more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_13F12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13F12-L23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043830 ID=CX043830; Name=CX043830; organism=Citrus sinensis; type=EST; length=861bp
CAAATTTTCATTCCTTATAGTTTGGAGTACAAATGCATTACATATACACC
ACCCTCTTTTTTCTTTTTCCCAAGACAAATAAAATAGAAAATATATAAAA
GGTCAAATAACCAGAAATAAGGTACATTACCAAGGAAATAAAAGAATTTG
ACCCCGCCAGCTGTCTTTAAAAACTACAAGGTGTGATGATAATACAAGAA
GGCAGCAGCATTTGAAAAGGATAAAGAAAAAAAAATCACTCTTCAGGCGC
CATCACAATTCACAATCAATAAAAGATACTACCCCACAACTACATTTTTC
CAAAGGGCAAATAGACAAATGCTGGATGATAAAGCAACTTTGGACAGAGC
CATTCGCAAAAGCAGAACAAGAAATTTATAGTTATGATGCAAGGAGGTAG
ATTAACACTCGCTTAAATAAGCTTGATCTTTAGAATAAATCAAACTTTTT
CTTCTGCATGTCTTGCTTCCATTTCGGTAACTTATAAAATGCTTCTTTCA
TCATCCCAAATACAGTCTGGAACTCCTCATCTGACAGATAAGCCTCTCTT
CGTTTAAAATCAATTCCAGTAACTGGGTTGTCAGATCTGGCCTTCAGTTG
ATCATAACTGAATGTGCTTCTACTAGTTTCGCTACCATTCTCATCTTGTT
CTGTCACTTGCTTCGTTTCTGAATCATCTCCGTTGCTTTCTGATACAGGT
ACAACTTCTTCTGTCTCTTTGACATCACCAACTTGTTCAGAAGCCTCTGA
TTCAGAGCGGGCATATTCAGCTTTTGGTTCAGAAGAAAGACTAGTTTCTG
CTGTAGGACTGCCACTGGTACGGGTGGGGGAGGTATCAGGTGATCTCTTC
TTTTCAGCACT
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