CX043827

Overview
NameCX043827
Unique NameCX043827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3604 contig Csv1_Contig3604:1..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043827 vs. ExPASy Swiss-Prot
Match: Y1222_ARATH (Uncharacterized protein At1g32220, chloroplastic OS=Arabidopsis thaliana GN=At1g32220 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.203e-65
Identity = 131/217 (60.37%), Postives = 155/217 (71.43%), Query Frame = 2 
Query:  131 TSFSCYGAVSTLRTPIPLSRLSTFRSPSVSTIPNRFYKFRVKCSRAEAGVVDDSRSAPIDVVADVKSERXXXXXXXXXXXXAICKAAVSKGIEVISLSRSGRPTYSGSWVDQVTWKSGDVFYVNWDEVLTGATAVVSTIGGVGSEEQMLRINGEXXXXXXXXXKEYGVPKFILISVHDYNLPSFLLSSAYFTGKRKAESEVLSKYPNSGVVLRPAFI 781
            TSF  + A+S      P    ++FR  S S    R +K  VKC+ AEAG+   S SAPID+VADVKSER            AICKAA+S GIEV+S+SRSGRP +  SW+DQVTW +GDVFY+NWDEVL GATAVVSTIGG G+EEQM RINGE         K++GVPKF+LI+VHDYNLP F+LS+ YFTGKR AE+E+LSKYP SGVVLRP FI
Sbjct:    2 TSFLSFSAISAHP---PTFSGASFRPRSFSP---RLFKSCVKCTYAEAGLSSASWSAPIDIVADVKSERVVVLGGNGFVGSAICKAAISNGIEVVSVSRSGRPNFEDSWLDQVTWVTGDVFYLNWDEVLLGATAVVSTIGGFGNEEQMKRINGEANVTAVNAAKDFGVPKFVLITVHDYNLPPFILSNGYFTGKRNAEAELLSKYPTSGVVLRPGFI 212
The following BLAST results are available for this feature:
BLAST of CX043827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1222_ARATH3.203e-6560.37Uncharacterized protein At1g32220, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_13F10_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13F10-L19-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043827 ID=CX043827; Name=CX043827; organism=Citrus sinensis; type=EST; length=783bp
GTCAGTAGGAAATGTGGTTATTCATTATTGTTTCATTCTTTTTCCTTCGT
TCATTTCTTCTCGCTGGCCGGAAAAGCTCCACTCACTGCTGTTAATTTAG
ACTCCACAAAAACAAAAAAGAACAATGGCGACGTCGTTTTCGTGCTACGG
CGCCGTTTCCACGCTTCGCACTCCCATTCCACTCTCTAGACTTTCCACCT
TTCGTTCTCCGTCCGTCTCCACTATTCCGAACCGGTTCTACAAGTTTAGA
GTCAAGTGCAGCCGTGCGGAAGCAGGTGTAGTGGATGACTCTAGGTCTGC
TCCAATAGATGTTGTTGCAGATGTTAAGTCTGAGCGGGTTGTGGTCTTAG
GAGGCAGTGGTTTTGTTGGTTCTGCAATATGCAAGGCTGCAGTGTCCAAG
GGCATAGAGGTCATAAGCCTAAGCAGGTCAGGACGTCCTACTTACTCTGG
GTCATGGGTAGATCAAGTTACTTGGAAATCAGGAGATGTTTTCTATGTAA
ACTGGGATGAAGTACTTACTGGGGCCACTGCAGTAGTTTCTACCATTGGA
GGCGTTGGTAGTGAGGAACAGATGCTACGGATCAATGGTGAGGCTAATGT
TGTGGCAGTGAATGCTGCAAAGGAATATGGAGTTCCCAAGTTTATCTTGA
TCAGTGTGCATGATTACAATTTGCCATCATTTCTACTTTCATCCGCATAT
TTCACAGGAAAGAGGAAAGCAGAATCAGAAGTTCTTTCAAAATATCCAAA
CTCTGGTGTCGTTTTAAGACCCGCTTTCATATA
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