CX043824

Overview
NameCX043824
Unique NameCX043824
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9549 contig Csv1_Contig9549:472..1290. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043824 vs. ExPASy Swiss-Prot
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.915e-63
Identity = 120/191 (62.83%), Postives = 143/191 (74.87%), Query Frame = 1
Query:    1 FQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKAVISSKLSKDGGVEPLLKSS 573
            F  YG  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKVS++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKT             + QHYVLYP KK   S +  ++   EPL+ SS
Sbjct:   77 FDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKVSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKSTVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHYVLYPEKKVSKSPETGEESN-EPLIDSS 266          
BLAST of CX043824 vs. ExPASy Swiss-Prot
Match: CTNS_DICDI (Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.480e-31
Identity = 68/173 (39.31%), Postives = 104/173 (60.12%), Query Frame = 1
Query:    1 FQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKA 516
            + KYG    IPV  +D+AF++H  +LT IT+ Q  IY+RG QK SK+ + I +++W++  V   +   N  +WLW+IN+++ +++ +T IKYIPQA +NF+ KST G+S+ N+LLDF GG  +  QM +   D  +W  F G+  K              I QHY+LY   K+
Sbjct:   72 YDKYGPP--IPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKSTSGWSVHNVLLDFSGGVLSLLQMFLDVADSGNWNIFTGDPVKLGLSLFSIAFDILFIIQHYILYRNPKS 242          
BLAST of CX043824 vs. ExPASy Swiss-Prot
Match: CTNS_HUMAN (Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 66/158 (41.77%), Postives = 94/158 (59.49%), Query Frame = 1
Query:   31 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLY 501
            PV +NDV FS+HAV+LT+I + Q  +YERG Q+VS  ++  + + WL A V   VA     +WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN+LLDF GG  +  QM +QS + + W   +G+  K                QH+ LY
Sbjct:  200 PVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLY 357          
BLAST of CX043824 vs. ExPASy Swiss-Prot
Match: CTNS_BOVIN (Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 63/161 (39.13%), Postives = 95/161 (59.01%), Query Frame = 1
Query:   31 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHS-WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAK 510
            PV +NDV FS+HAV LT++ + Q  +YERG Q+VS ++++ + + WL   +   +A    + WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN+LLDF GG  +  QM +QS + + W   +G+  K                QH+ LY  K
Sbjct:  200 PVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFLVLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDVVFFIQHFCLYRKK 360          
BLAST of CX043824 vs. ExPASy Swiss-Prot
Match: CTNS_MOUSE (Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.927e-27
Identity = 67/161 (41.61%), Postives = 91/161 (56.52%), Query Frame = 1
Query:   31 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAK 510
            PV +ND  FS+HAV LT+I + Q  +YERG Q+VS  S+  + + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  KST G+SIG +LLDF GG  +  QM +QS + + W   +G+  K                QH+ LY  K
Sbjct:  200 PVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLYRKK 360          
BLAST of CX043824 vs. ExPASy Swiss-Prot
Match: CTNS_DROME (Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.927e-27
Identity = 70/187 (37.43%), Postives = 103/187 (55.08%), Query Frame = 1
Query:   31 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHS---WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHP 582
            PV  NDV FS+HA+  T IT+ Q   Y+R  Q+VS I+  I+++   A  V     L   S   WL  + + + +++ +T+IKY+PQA+MN+RRKST G+SIGNILLDF GG  +  QMI+ + + + WV+ +G+  K              + QHYV Y   +   SS L+    V+     S  P
Sbjct:  205 PVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAI--FAVVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTSGWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLFDVFFMLQHYVFYRHSRESSSSDLTTVTDVQNRTNESPPP 389          
BLAST of CX043824 vs. ExPASy Swiss-Prot
Match: CTNS_CAEEL (Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.484e-23
Identity = 64/160 (40.00%), Postives = 87/160 (54.37%), Query Frame = 1
Query:   31 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVA--LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYP 504
            PV  NDV F++HA L   IT+ Q   YER  Q VS   +A++ +V ++   C   A  L     L  +   + I++ +T  KY PQA  N+ RKST G+SIGNI+LDF GG  +  QMI+Q+++ N W  FY N  K              + QHYVLYP
Sbjct:  202 PVLLNDVVFAVHAFLACFITILQCLFYERDNQSVSSKCIALM-IVLISFGFCSAAATVLRKIQLLSFVTSLSYIKMAVTCCKYFPQAYFNYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQHYVLYP 360          
BLAST of CX043824 vs. ExPASy Swiss-Prot
Match: CTNS_CAEBR (Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.305e-23
Identity = 64/190 (33.68%), Postives = 98/190 (51.58%), Query Frame = 1
Query:   31 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVS-KISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKAVISSKLSKDG-GVEPLLKSSDHPESEN 594
            PV  NDV F++HA L   +T+ Q   YER  Q++S K  + I+ +V           L   + L  +   + I++ +T  KY PQA  N++RKST G+SIGNILLDF GG  +  QM++Q+I+ N W  FY N  K              + QHY LYP  +   +     D    + +++ ++H  ++N
Sbjct:  201 PVLLNDVVFAVHAFLACFVTILQCIFYERDQQRISTKCIILIIGLVSFGFVSVVVTVLNKITILDFVVSLSYIKMAVTCCKYFPQAYFNYQRKSTVGWSIGNILLDFTGGSLDILQMVLQAINVNDWSAFYANPVKFGLGFVSIFFDIIFMIQHYALYPDAEVPHNEYHGVDNPDPDSIVRDAEHGAADN 390          
The following BLAST results are available for this feature:
BLAST of CX043824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CTNS_ARATH1.915e-6362.83Cystinosin homolog OS=Arabidopsis thaliana GN=At5g... [more]
CTNS_DICDI1.480e-3139.31Cystinosin homolog OS=Dictyostelium discoideum GN=... [more]
CTNS_HUMAN1.297e-2741.77Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2[more]
CTNS_BOVIN1.297e-2739.13Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1[more]
CTNS_MOUSE4.927e-2741.61Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1[more]
CTNS_DROME4.927e-2737.43Cystinosin homolog OS=Drosophila melanogaster GN=C... [more]
CTNS_CAEEL1.484e-2340.00Cystinosin homolog OS=Caenorhabditis elegans GN=ct... [more]
CTNS_CAEBR3.305e-2333.68Cystinosin homolog OS=Caenorhabditis briggsae GN=c... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_13F08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13F08-L15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043824 ID=CX043824; Name=CX043824; organism=Citrus sinensis; type=EST; length=819bp
TTTCAGAAGTACGGCCGCGATCAGATGATTCCCGTAGCAGCAAATGATGT
TGCGTTTTCAATGCATGCTGTTCTCTTGACAATAATTACCCTGTTCCAAA
TTGCAATCTATGAACGTGGTGTTCAGAAGGTATCTAAGATTTCTATGGCA
ATTGTCTCTGTTGTTTGGTTGGCTGCCGCAGTTTGTTTCTTCGTAGCATT
GCCAAACCATTCTTGGCTTTGGCTCATCAACTTCTTTAACGCTATTCAAG
TTATTATGACACTCATCAAGTATATTCCACAGGCCATCATGAACTTTAGG
CGAAAGAGTACAGATGGTTTCAGCATTGGAAATATATTACTTGATTTTCT
TGGAGGGTGTACTAATTACTCACAGATGATTGTTCAGTCTATTGATCAAA
ATTCTTGGGTTAACTTTTATGGAAATATAGGGAAGACATTGCTATCTCTG
GTATCCGTAGTCTTTGATCTTCTTTTCATATGTCAGCATTATGTGCTATA
TCCTGCCAAGAAAGCGGTAATCTCTTCTAAACTTAGCAAAGATGGTGGTG
TAGAGCCACTTCTTAAGTCTTCTGATCACCCAGAGTCAGAAAATGTATAA
AGGTGAAATGCCAACACAATTTGTGAGGACGCAATCTATTTACACCACAT
AGAAATCAAACCATATTGTTGCTGCATGCACACCACATCAGCAATTTGTA
TGATTTTCTTACTTGTGTATAGGAAGAAACAGTCATGTTCTGGAATTAGA
AATTACTATCAAATATGATTCCTGTAATTGGTTAAAGCTATTAATTTTAA
ACCATATACTAGTGTTAAA
back to top