CX043824
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043824 vs. ExPASy Swiss-Prot
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 1.915e-63 Identity = 120/191 (62.83%), Postives = 143/191 (74.87%), Query Frame = 1 Query: 1 FQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKAVISSKLSKDGGVEPLLKSS 573 F YG +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKVS++++ IV VVW AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST G+SIGNILLDF GG NY QM++QSIDQNSW NFYGN+GKT + QHYVLYP KK S + ++ EPL+ SS Sbjct: 77 FDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKVSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKSTVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHYVLYPEKKVSKSPETGEESN-EPLIDSS 266
BLAST of CX043824 vs. ExPASy Swiss-Prot
Match: CTNS_DICDI (Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.480e-31 Identity = 68/173 (39.31%), Postives = 104/173 (60.12%), Query Frame = 1 Query: 1 FQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKA 516 + KYG IPV +D+AF++H +LT IT+ Q IY+RG QK SK+ + I +++W++ V + N +WLW+IN+++ +++ +T IKYIPQA +NF+ KST G+S+ N+LLDF GG + QM + D +W F G+ K I QHY+LY K+ Sbjct: 72 YDKYGPP--IPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKSTSGWSVHNVLLDFSGGVLSLLQMFLDVADSGNWNIFTGDPVKLGLSLFSIAFDILFIIQHYILYRNPKS 242
BLAST of CX043824 vs. ExPASy Swiss-Prot
Match: CTNS_HUMAN (Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27 Identity = 66/158 (41.77%), Postives = 94/158 (59.49%), Query Frame = 1 Query: 31 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLY 501 PV +NDV FS+HAV+LT+I + Q +YERG Q+VS ++ + + WL A V VA +WL + F+ I++ +TL+KY PQA MNF KST+G+SIGN+LLDF GG + QM +QS + + W +G+ K QH+ LY Sbjct: 200 PVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLY 357
BLAST of CX043824 vs. ExPASy Swiss-Prot
Match: CTNS_BOVIN (Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27 Identity = 63/161 (39.13%), Postives = 95/161 (59.01%), Query Frame = 1 Query: 31 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHS-WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAK 510 PV +NDV FS+HAV LT++ + Q +YERG Q+VS ++++ + + WL + +A + WL + F+ I++ +TL+KY PQA MNF KST+G+SIGN+LLDF GG + QM +QS + + W +G+ K QH+ LY K Sbjct: 200 PVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFLVLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDVVFFIQHFCLYRKK 360
BLAST of CX043824 vs. ExPASy Swiss-Prot
Match: CTNS_MOUSE (Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.927e-27 Identity = 67/161 (41.61%), Postives = 91/161 (56.52%), Query Frame = 1 Query: 31 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAK 510 PV +ND FS+HAV LT+I + Q +YERG Q+VS S+ + + WL V VA +WL + F+ I++I+TLIKY PQA MNF KST G+SIG +LLDF GG + QM +QS + + W +G+ K QH+ LY K Sbjct: 200 PVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLYRKK 360
BLAST of CX043824 vs. ExPASy Swiss-Prot
Match: CTNS_DROME (Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 4.927e-27 Identity = 70/187 (37.43%), Postives = 103/187 (55.08%), Query Frame = 1 Query: 31 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHS---WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHP 582 PV NDV FS+HA+ T IT+ Q Y+R Q+VS I+ I+++ A V L S WL + + + +++ +T+IKY+PQA+MN+RRKST G+SIGNILLDF GG + QMI+ + + + WV+ +G+ K + QHYV Y + SS L+ V+ S P Sbjct: 205 PVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAI--FAVVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTSGWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLFDVFFMLQHYVFYRHSRESSSSDLTTVTDVQNRTNESPPP 389
BLAST of CX043824 vs. ExPASy Swiss-Prot
Match: CTNS_CAEEL (Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=2 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 1.484e-23 Identity = 64/160 (40.00%), Postives = 87/160 (54.37%), Query Frame = 1 Query: 31 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVA--LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYP 504 PV NDV F++HA L IT+ Q YER Q VS +A++ +V ++ C A L L + + I++ +T KY PQA N+ RKST G+SIGNI+LDF GG + QMI+Q+++ N W FY N K + QHYVLYP Sbjct: 202 PVLLNDVVFAVHAFLACFITILQCLFYERDNQSVSSKCIALM-IVLISFGFCSAAATVLRKIQLLSFVTSLSYIKMAVTCCKYFPQAYFNYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQHYVLYP 360
BLAST of CX043824 vs. ExPASy Swiss-Prot
Match: CTNS_CAEBR (Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.305e-23 Identity = 64/190 (33.68%), Postives = 98/190 (51.58%), Query Frame = 1 Query: 31 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVS-KISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKAVISSKLSKDG-GVEPLLKSSDHPESEN 594 PV NDV F++HA L +T+ Q YER Q++S K + I+ +V L + L + + I++ +T KY PQA N++RKST G+SIGNILLDF GG + QM++Q+I+ N W FY N K + QHY LYP + + D + +++ ++H ++N Sbjct: 201 PVLLNDVVFAVHAFLACFVTILQCIFYERDQQRISTKCIILIIGLVSFGFVSVVVTVLNKITILDFVVSLSYIKMAVTCCKYFPQAYFNYQRKSTVGWSIGNILLDFTGGSLDILQMVLQAINVNDWSAFYANPVKFGLGFVSIFFDIIFMIQHYALYPDAEVPHNEYHGVDNPDPDSIVRDAEHGAADN 390 The following BLAST results are available for this feature:
BLAST of CX043824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043824 ID=CX043824; Name=CX043824; organism=Citrus sinensis; type=EST; length=819bpback to top |