CX043809

Overview
NameCX043809
Unique NameCX043809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043809 vs. ExPASy Swiss-Prot
Match: DNJ11_ARATH (Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = -1
Query:  261 PGSLFEVLGIQTGATCQEIKTAFWKLARVLHPDVAA*SQ-NENSAYKFMKLHEAFETFSDPKKGGDYDCTLFRGRSPSSSPFAVLGVANTMATLLNSRFCAYSRGTWGTDQWW 596
            P SL++VL +  GAT Q+IK+A+ +LAR+ HPDVA   + + +SA +FMK+H A+ T SDP+K   YD  + R   P +   + LG              +Y    W TDQ W
Sbjct:   63 PASLYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPEKRSVYDRRMLRRSRPLTVGTSGLG--------------SYVGRNWETDQCW 161          
The following BLAST results are available for this feature:
BLAST of CX043809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DNJ11_ARATH3.288e-1338.94Chaperone protein dnaJ 11, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_13E10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13E10-J19-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043809 ID=CX043809; Name=CX043809; organism=Citrus sinensis; type=EST; length=629bp
TTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTACAAAAAATTGAAAAACC
CTAAAAACTGAACTTTTACATTGTACCCATTGCAATTGCAGGCTGTAAAA
ATGCCCCCGGGATTAACAAATTTCAATTACAATCAAAAATATCTACCCCC
GTTAGCATTAATCCCCAAACGTTAAAGGGCACCATCTCTAATCCTAATTC
CTGAACAGCTAAAATCATATAACAAAATCTTGCAGTTGCACCTATGTATT
TTATTTTCTACCACCACTGATCAGTCCCCCATGTCCCCCTTGAGTAGGCA
CAAAATCTTGAATTCAACAAAGTGGCCATCGTATTTGCCACCCCCAAAAC
AGCAAATGGGGAACTCGATGGGCTTCTTCCCCTGAAAAGGGTACAATCGT
AGTCCCCACCCTTCTTGGGATCTGAAAAAGTTTCGAAAGCTTCGTGTAAT
TTCATGAACTTATATGCTGAATTCTCATTTTGACTCTAAGCGGCAACATC
CGGGTGCAAAACTCTTGCTAATTTCCAAAAAGCAGTCTTGATTTCCTGAC
ACGTGGCACCCGTCTGAATCCCCAGAACTTCGAAAAGTGACCCGGGTCCA
GAAAAAGTAATGTGATGATGGGTTCTTGT
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