CX043807

Overview
NameCX043807
Unique NameCX043807
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043807_ssr151 microsatellite CX043807_ssr151:151..162. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3602 contig Csv1_Contig3602:1..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043807 vs. ExPASy Swiss-Prot
Match: AKR2_ARATH (Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.075e-13
Identity = 46/125 (36.80%), Postives = 71/125 (56.80%), Query Frame = 1
Query:  238 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIVACMNPGLYDVAKTLIELGAKVDAYRPSRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 612
            + +E +++Q  + G+VEG+KA    G   +  D EG+T L  AC   G    A+ LI+ GA V+A   +++  TPLH+AA  G +  V LLL  GA   + N D +TP++VA+      VV+ +E
Sbjct:  216 EEEESIVHQTASLGDVEGLKAALASGGNKDEEDSEGRTALHFAC-GYGELKCAQVLIDAGASVNAVDKNKN--TPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKTPIDVAKLNSQLEVVKLLE 337          
BLAST of CX043807 vs. ExPASy Swiss-Prot
Match: ANR11_HUMAN (Ankyrin repeat domain-containing protein 11 OS=Homo sapiens GN=ANKRD11 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 47/118 (39.83%), Postives = 61/118 (51.69%), Query Frame = 1
Query:  247 EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIVACMNPGLYDVAKTLIELGAKVDAYRPSRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 600
            E  L++    G+   IK L  +GA +   D  G T L  AC N G YDVAK L+  GA+V+         TPLH AA  G  + VKLLL YG N    N   +TPL+VA +    N++
Sbjct:  169 ETRLHRAAIRGDARRIKELISEGADVNVKDFAGWTALHEAC-NRGYYDVAKQLLAAGAEVNT--KGLDDDTPLHDAANNGHYKVVKLLLRYGGNPQQSNRKGETPLKVANSPTMVNLL 283          
The following BLAST results are available for this feature:
BLAST of CX043807 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AKR2_ARATH4.075e-1336.80Ankyrin repeat domain-containing protein 2 OS=Arab... [more]
ANR11_HUMAN3.814e-1139.83Ankyrin repeat domain-containing protein 11 OS=Hom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_13E08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13E08-J15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043807 ID=CX043807; Name=CX043807; organism=Citrus sinensis; type=EST; length=822bp
GCCCCCCCTTTTGACTTCGTTAAAATACTTAGCAATTCAATCCTTCTCTG
CTAAGAAACCTTCCCTCAAAAATTTTAAATAATTATAATAATTATAATTT
TATTTATTCTTCCTCTATCCTATCTGTATTTATTTACTCGTTTTCCTTGC
AATTAATTAATTTGTAAACCAAAAAGTAAGCTGCATTTTCCCGGCGGATT
TTCATTTTCCTGGGAAACAAACACGATGGGGCTGCAACAATCCAAGGAGG
AGTTGCTGTATCAACAAGTTAATTACGGGAACGTCGAAGGCATCAAAGCT
CTTTGCCGAGACGGCGCTGGCCTCGAGTGGATTGATAAAGAAGGGAAAAC
GCCGTTGATTGTGGCGTGTATGAACCCAGGGCTTTATGATGTGGCCAAAA
CTTTGATTGAGCTTGGGGCTAAAGTCGATGCTTATCGTCCCAGTCGTCAT
GGTGGGACTCCTTTACATCATGCAGCTAAAAGAGGCCTCGAAAGAACTGT
AAAGTTACTTCTTTCGTATGGAGCGAATGCATTAGTACTGAATGATGATT
GTCAAACTCCTCTTGAGGTTGCTAGAGCCAAAGGGTTCACCAATGTTGTA
CGTGCAATTGAGAATCACATCTGCATATTCTCTGGCTGGTTGCGAGAGCT
TTATGGACCAGGATTTCTTGAATTATTAGCCCCTCAGTTGCTTTCAAGAA
AAGTTTGGGTTGCTGTCTTGCCAACTGGTTCCCGTAACCCTACAAAGCCT
TTCAAGTTGGAGCTTGCAATATATCCTAGTTTGCTGGATGCCCGACCACG
AATGGTTATTGCTCTGTGGAAA
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