DC900346
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: PTBP3_ARATH (Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1) HSP 1 Score: 421.394 bits (1082), Expect = 3.148e-117 Identity = 205/249 (82.33%), Postives = 222/249 (89.16%), Query Frame = 2 Query: 2 NALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLLRNKPDHALXQMGDGXQAELAXHFLKG 748 +ALQF+TNVQPTIRGRNVYVQFSSHQELTT+EQN GR DEPNRILLVTIHHMLYPITV+VLHQVFSP+GFVEK+VTFQKSAGFQALIQYQ++ A AR++LQGRNIYDGCCQLDIQFSNL+ELQVNYNN+RSRD+TNPNLPAEQKGR S Y + GVA+PQM FGGGLPPGITGTNDRCTVLVSNLN+D IDEDKLFNL SLYGNI+RIKLLRNKPDHAL QMGDG QAELA HFLKG Sbjct: 56 SALQFFTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEELQVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAFGGGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: PTBP1_HUMAN (Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 8.752e-43 Identity = 105/289 (36.33%), Postives = 154/289 (53.29%), Query Frame = 2 Query: 8 LQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA-EQKGRPSQSGYSEAGVAFPQ---------MXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLLRNKPDHALXQMGDGXQAELAXHFLKG 748 + +YT+V P +RG+ +Y+QFS+H+EL T Q R G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ + + Q+ + G++ P + G PG+ G + +LVSNLN +R+ LF L +YG++ R+K+L NK ++AL QM DG QA+LA L G Sbjct: 111 VNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG 396
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: PTBP1_BOVIN (Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 1.143e-42 Identity = 105/289 (36.33%), Postives = 154/289 (53.29%), Query Frame = 2 Query: 8 LQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA-EQKGRPSQSGYSEAGVAFPQ---------MXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLLRNKPDHALXQMGDGXQAELAXHFLKG 748 + +YT+V P +RG+ +Y+QFS+H+EL T Q R G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ + + Q+ + G++ P + G PG+ G + +LVSNLN +R+ LF L +YG++ R+K+L NK ++AL QM DG QA+LA L G Sbjct: 111 VNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNG 396
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: PTBP1_MOUSE (Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1 PE=1 SV=2) HSP 1 Score: 169.088 bits (427), Expect = 2.816e-41 Identity = 101/281 (35.94%), Postives = 150/281 (53.38%), Query Frame = 2 Query: 8 LQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA-EQKGRPSQSGYSEAGVAFPQMXXXXXXXXXFGGGLP--------PGITGTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLLRNKPDHALXQMGDGXQAEL 727 + +YT+V P +RG+ +Y+QFS+H+EL T Q R G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ + + Q+ + G++ P + PG+ G + +LVSNLN +R+ LF L +YG++ R+K+L NK ++AL QM DG QA+L Sbjct: 110 VNYYTSVAPVLRGQPIYIQFSNHKELKTDSSPNQVRAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQL 387
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: PTBP1_RAT (Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus GN=Ptbp1 PE=1 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 6.272e-41 Identity = 109/314 (34.71%), Postives = 155/314 (49.36%), Query Frame = 2 Query: 8 LQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQK---------------GRPSQSGY-----------SEAGVAFPQ---------MXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLLRNKPDHALXQMGDGXQAELAXHFLKG 748 + +YT+V P +RG+ +Y+QFS+H+EL T Q R G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G S S Y S AG++ P + G PG+ G + +LVSNLN +R+ LF L +YG++ R+K+L NK ++AL +M DG QA+LA L G Sbjct: 110 VNYYTSVAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPGIMSASPYAGAVPSHLCHPSRAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNG 420
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: PTBP1_PIG (Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 2.383e-40 Identity = 110/315 (34.92%), Postives = 154/315 (48.89%), Query Frame = 2 Query: 8 LQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQK---------------GRPSQSGYSEAG----VAFPQ-----------------MXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLLRNKPDHALXQMGDGXQAELAXHFLKG 748 + +YT+V P +RG+ +Y+QFS+H+EL T Q R G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G S S Y+ AG A PQ + G PG+ G + +LVSNLN +R+ LF L +Y ++ R+K+L NK ++AL QM DG QA+LA L G Sbjct: 111 VNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPSLDQTMAAAFGAPGIMSASPYAGAGFPPTFAIPQAATVSVPNVHGALAPLAIPSAAARAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYCDVQRVKILFNKKENALVQMADGSQAQLAMSHLNG 422
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: PTBP2_RAT (Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus GN=Ptbp2 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.545e-39 Identity = 102/292 (34.93%), Postives = 150/292 (51.37%), Query Frame = 2 Query: 8 LQFYTNVQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG----------------VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLLRNKPDHALXQMGDGXQAELAXHFLKG 748 + +Y+ V P +R + +Y+Q+S+H+EL TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A +A P G+P G N +LVSNLN + + LF L +YG++ R+K+L NK D AL QM DG Q++LA + L G Sbjct: 111 VNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN--TVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNG 397
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: PTBP2_MOUSE (Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2 PE=1 SV=2) HSP 1 Score: 163.31 bits (412), Expect = 1.545e-39 Identity = 102/292 (34.93%), Postives = 150/292 (51.37%), Query Frame = 2 Query: 8 LQFYTNVQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG----------------VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLLRNKPDHALXQMGDGXQAELAXHFLKG 748 + +Y+ V P +R + +Y+Q+S+H+EL TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A +A P G+P G N +LVSNLN + + LF L +YG++ R+K+L NK D AL QM DG Q++LA + L G Sbjct: 111 VNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN--TVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNG 397
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: PTBP2_HUMAN (Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2 PE=1 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.545e-39 Identity = 102/292 (34.93%), Postives = 150/292 (51.37%), Query Frame = 2 Query: 8 LQFYTNVQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG----------------VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLLRNKPDHALXQMGDGXQAELAXHFLKG 748 + +Y+ V P +R + +Y+Q+S+H+EL TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A +A P G+P G N +LVSNLN + + LF L +YG++ R+K+L NK D AL QM DG Q++LA + L G Sbjct: 111 VNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN--TVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNG 397
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: ROD1_MOUSE (Regulator of differentiation 1 OS=Mus musculus GN=Rod1 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 4.495e-39 Identity = 109/310 (35.16%), Postives = 153/310 (49.35%), Query Frame = 2 Query: 8 LQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS---------------QSGYSEA-----GVAFPQ------------MXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLLRNKPDHALXQMGDGXQAELAXHFLKG 748 + +YT V P +R + VY+Q+S+H+EL T Q R G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS S Y+ A +AFPQ + G + PG +G +LV+NLN D I LF L +YG++ R+K++ NK ++AL QM D QA+LA + L G Sbjct: 82 INYYTPVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLLPGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAVPGALGPLTLTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSG 388 The following BLAST results are available for this feature:
BLAST of DC900346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900346 ID=DC900346; Name=DC900346; organism=Citrus sinensis; type=EST; length=848bpback to top |